efischer/BiGpairSEQ
1
0
Fork 0
Code Issues Pull Requests Projects Releases 13 Wiki Activity

All working, able to be built to .jar

Browse Source
This commit is contained in:
efischer
2021-11-12 10:41:44 -06:00
parent d39fdbee3b
commit e15cbc6672
21 changed files with 1003 additions and 12 deletions
Download Patch File Download Diff File Expand all files Collapse all files

3
.idea/.gitignore generated vendored Normal file
View File

@@ -0,0 +1,3 @@
# Default ignored files
/shelf/
/workspace.xml

15
.idea/artifacts/TCellSim_jar.xml generated Normal file
View File

@@ -0,0 +1,15 @@
<component name="ArtifactManager">
<artifact type="jar" name="TCellSim:jar">
<output-path>$PROJECT_DIR$/out/artifacts/TCellSim_jar</output-path>
<root id="archive" name="TCellSim.jar">
<element id="directory" name="META-INF">
<element id="file-copy" path="$PROJECT_DIR$/src/main/java/META-INF/MANIFEST.MF" />
</element>
<element id="module-output" name="TCellSim" />
<element id="extracted-dir" path="$MAVEN_REPOSITORY$/org/apache/commons/commons-csv/1.9.0/commons-csv-1.9.0.jar" path-in-jar="/" />
<element id="extracted-dir" path="$MAVEN_REPOSITORY$/org/jetbrains/annotations/23.0.0/annotations-23.0.0.jar" path-in-jar="/" />
<element id="extracted-dir" path="$MAVEN_REPOSITORY$/org/jgrapht/jgrapht-core/1.5.1/jgrapht-core-1.5.1.jar" path-in-jar="/" />
<element id="extracted-dir" path="$MAVEN_REPOSITORY$/org/jheaps/jheaps/0.13/jheaps-0.13.jar" path-in-jar="/" />
</root>
</artifact>
</component>

15
.idea/artifacts/TCellSim_jar2.xml generated Normal file
View File

@@ -0,0 +1,15 @@
<component name="ArtifactManager">
<artifact type="jar" name="TCellSim:jar2">
<output-path>$PROJECT_DIR$/out/artifacts/TCellSim_jar2</output-path>
<root id="archive" name="TCellSim.jar">
<element id="directory" name="META-INF">
<element id="file-copy" path="$PROJECT_DIR$/src/main/java/META-INF/MANIFEST.MF" />
</element>
<element id="module-output" name="TCellSim" />
<element id="extracted-dir" path="$MAVEN_REPOSITORY$/org/apache/commons/commons-csv/1.9.0/commons-csv-1.9.0.jar" path-in-jar="/" />
<element id="extracted-dir" path="$MAVEN_REPOSITORY$/org/jetbrains/annotations/23.0.0/annotations-23.0.0.jar" path-in-jar="/" />
<element id="extracted-dir" path="$MAVEN_REPOSITORY$/org/jgrapht/jgrapht-core/1.5.1/jgrapht-core-1.5.1.jar" path-in-jar="/" />
<element id="extracted-dir" path="$MAVEN_REPOSITORY$/org/jheaps/jheaps/0.13/jheaps-0.13.jar" path-in-jar="/" />
</root>
</artifact>
</component>

13
.idea/compiler.xml generated Normal file
View File

@@ -0,0 +1,13 @@
<?xml version="1.0" encoding="UTF-8"?>
<project version="4">
<component name="CompilerConfiguration">
<annotationProcessing>
<profile name="Maven default annotation processors profile" enabled="true">
<sourceOutputDir name="target/generated-sources/annotations" />
<sourceTestOutputDir name="target/generated-test-sources/test-annotations" />
<outputRelativeToContentRoot value="true" />
<module name="TCellSim" />
</profile>
</annotationProcessing>
</component>
</project>

20
.idea/jarRepositories.xml generated Normal file
View File

@@ -0,0 +1,20 @@
<?xml version="1.0" encoding="UTF-8"?>
<project version="4">
<component name="RemoteRepositoriesConfiguration">
<remote-repository>
<option name="id" value="central" />
<option name="name" value="Central Repository" />
<option name="url" value="https://repo.maven.apache.org/maven2" />
</remote-repository>
<remote-repository>
<option name="id" value="central" />
<option name="name" value="Maven Central repository" />
<option name="url" value="https://repo1.maven.org/maven2" />
</remote-repository>
<remote-repository>
<option name="id" value="jboss.community" />
<option name="name" value="JBoss Community repository" />
<option name="url" value="https://repository.jboss.org/nexus/content/repositories/public/" />
</remote-repository>
</component>
</project>

10
.idea/libraries/apache_commons_csv.xml generated Normal file
View File

@@ -0,0 +1,10 @@
<component name="libraryTable">
<library name="apache.commons.csv" type="repository">
<properties maven-id="org.apache.commons:commons-csv:1.9.0" />
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/apache/commons/commons-csv/1.9.0/commons-csv-1.9.0.jar!/" />
</CLASSES>
<JAVADOC />
<SOURCES />
</library>
</component>

11
.idea/libraries/jgrapht_core.xml generated Normal file
View File

@@ -0,0 +1,11 @@
<component name="libraryTable">
<library name="jgrapht.core" type="repository">
<properties maven-id="org.jgrapht:jgrapht-core:1.5.1" />
<CLASSES>
<root url="jar://$MAVEN_REPOSITORY$/org/jgrapht/jgrapht-core/1.5.1/jgrapht-core-1.5.1.jar!/" />
<root url="jar://$MAVEN_REPOSITORY$/org/jheaps/jheaps/0.13/jheaps-0.13.jar!/" />
</CLASSES>
<JAVADOC />
<SOURCES />
</library>
</component>

14
.idea/misc.xml generated Normal file
View File

@@ -0,0 +1,14 @@
<?xml version="1.0" encoding="UTF-8"?>
<project version="4">
<component name="ExternalStorageConfigurationManager" enabled="true" />
<component name="MavenProjectsManager">
<option name="originalFiles">
<list>
<option value="$PROJECT_DIR$/pom.xml" />
</list>
</option>
</component>
<component name="ProjectRootManager" version="2" languageLevel="JDK_17" default="true" project-jdk-name="17" project-jdk-type="JavaSDK">
<output url="file://$PROJECT_DIR$/out" />
</component>
</project>

10
.idea/runConfigurations.xml generated Normal file
View File

@@ -0,0 +1,10 @@
<?xml version="1.0" encoding="UTF-8"?>
<project version="4">
<component name="RunConfigurationProducerService">
<option name="ignoredProducers">
<set>
<option value="com.android.tools.idea.compose.preview.runconfiguration.ComposePreviewRunConfigurationProducer" />
</set>
</option>
</component>
</project>

124
.idea/uiDesigner.xml generated Normal file
View File

@@ -0,0 +1,124 @@
<?xml version="1.0" encoding="UTF-8"?>
<project version="4">
<component name="Palette2">
<group name="Swing">
<item class="com.intellij.uiDesigner.HSpacer" tooltip-text="Horizontal Spacer" icon="/com/intellij/uiDesigner/icons/hspacer.png" removable="false" auto-create-binding="false" can-attach-label="false">
<default-constraints vsize-policy="1" hsize-policy="6" anchor="0" fill="1" />
</item>
<item class="com.intellij.uiDesigner.VSpacer" tooltip-text="Vertical Spacer" icon="/com/intellij/uiDesigner/icons/vspacer.png" removable="false" auto-create-binding="false" can-attach-label="false">
<default-constraints vsize-policy="6" hsize-policy="1" anchor="0" fill="2" />
</item>
<item class="javax.swing.JPanel" icon="/com/intellij/uiDesigner/icons/panel.png" removable="false" auto-create-binding="false" can-attach-label="false">
<default-constraints vsize-policy="3" hsize-policy="3" anchor="0" fill="3" />
</item>
<item class="javax.swing.JScrollPane" icon="/com/intellij/uiDesigner/icons/scrollPane.png" removable="false" auto-create-binding="false" can-attach-label="true">
<default-constraints vsize-policy="7" hsize-policy="7" anchor="0" fill="3" />
</item>
<item class="javax.swing.JButton" icon="/com/intellij/uiDesigner/icons/button.png" removable="false" auto-create-binding="true" can-attach-label="false">
<default-constraints vsize-policy="0" hsize-policy="3" anchor="0" fill="1" />
<initial-values>
<property name="text" value="Button" />
</initial-values>
</item>
<item class="javax.swing.JRadioButton" icon="/com/intellij/uiDesigner/icons/radioButton.png" removable="false" auto-create-binding="true" can-attach-label="false">
<default-constraints vsize-policy="0" hsize-policy="3" anchor="8" fill="0" />
<initial-values>
<property name="text" value="RadioButton" />
</initial-values>
</item>
<item class="javax.swing.JCheckBox" icon="/com/intellij/uiDesigner/icons/checkBox.png" removable="false" auto-create-binding="true" can-attach-label="false">
<default-constraints vsize-policy="0" hsize-policy="3" anchor="8" fill="0" />
<initial-values>
<property name="text" value="CheckBox" />
</initial-values>
</item>
<item class="javax.swing.JLabel" icon="/com/intellij/uiDesigner/icons/label.png" removable="false" auto-create-binding="false" can-attach-label="false">
<default-constraints vsize-policy="0" hsize-policy="0" anchor="8" fill="0" />
<initial-values>
<property name="text" value="Label" />
</initial-values>
</item>
<item class="javax.swing.JTextField" icon="/com/intellij/uiDesigner/icons/textField.png" removable="false" auto-create-binding="true" can-attach-label="true">
<default-constraints vsize-policy="0" hsize-policy="6" anchor="8" fill="1">
<preferred-size width="150" height="-1" />
</default-constraints>
</item>
<item class="javax.swing.JPasswordField" icon="/com/intellij/uiDesigner/icons/passwordField.png" removable="false" auto-create-binding="true" can-attach-label="true">
<default-constraints vsize-policy="0" hsize-policy="6" anchor="8" fill="1">
<preferred-size width="150" height="-1" />
</default-constraints>
</item>
<item class="javax.swing.JFormattedTextField" icon="/com/intellij/uiDesigner/icons/formattedTextField.png" removable="false" auto-create-binding="true" can-attach-label="true">
<default-constraints vsize-policy="0" hsize-policy="6" anchor="8" fill="1">
<preferred-size width="150" height="-1" />
</default-constraints>
</item>
<item class="javax.swing.JTextArea" icon="/com/intellij/uiDesigner/icons/textArea.png" removable="false" auto-create-binding="true" can-attach-label="true">
<default-constraints vsize-policy="6" hsize-policy="6" anchor="0" fill="3">
<preferred-size width="150" height="50" />
</default-constraints>
</item>
<item class="javax.swing.JTextPane" icon="/com/intellij/uiDesigner/icons/textPane.png" removable="false" auto-create-binding="true" can-attach-label="true">
<default-constraints vsize-policy="6" hsize-policy="6" anchor="0" fill="3">
<preferred-size width="150" height="50" />
</default-constraints>
</item>
<item class="javax.swing.JEditorPane" icon="/com/intellij/uiDesigner/icons/editorPane.png" removable="false" auto-create-binding="true" can-attach-label="true">
<default-constraints vsize-policy="6" hsize-policy="6" anchor="0" fill="3">
<preferred-size width="150" height="50" />
</default-constraints>
</item>
<item class="javax.swing.JComboBox" icon="/com/intellij/uiDesigner/icons/comboBox.png" removable="false" auto-create-binding="true" can-attach-label="true">
<default-constraints vsize-policy="0" hsize-policy="2" anchor="8" fill="1" />
</item>
<item class="javax.swing.JTable" icon="/com/intellij/uiDesigner/icons/table.png" removable="false" auto-create-binding="true" can-attach-label="false">
<default-constraints vsize-policy="6" hsize-policy="6" anchor="0" fill="3">
<preferred-size width="150" height="50" />
</default-constraints>
</item>
<item class="javax.swing.JList" icon="/com/intellij/uiDesigner/icons/list.png" removable="false" auto-create-binding="true" can-attach-label="false">
<default-constraints vsize-policy="6" hsize-policy="2" anchor="0" fill="3">
<preferred-size width="150" height="50" />
</default-constraints>
</item>
<item class="javax.swing.JTree" icon="/com/intellij/uiDesigner/icons/tree.png" removable="false" auto-create-binding="true" can-attach-label="false">
<default-constraints vsize-policy="6" hsize-policy="6" anchor="0" fill="3">
<preferred-size width="150" height="50" />
</default-constraints>
</item>
<item class="javax.swing.JTabbedPane" icon="/com/intellij/uiDesigner/icons/tabbedPane.png" removable="false" auto-create-binding="true" can-attach-label="false">
<default-constraints vsize-policy="3" hsize-policy="3" anchor="0" fill="3">
<preferred-size width="200" height="200" />
</default-constraints>
</item>
<item class="javax.swing.JSplitPane" icon="/com/intellij/uiDesigner/icons/splitPane.png" removable="false" auto-create-binding="false" can-attach-label="false">
<default-constraints vsize-policy="3" hsize-policy="3" anchor="0" fill="3">
<preferred-size width="200" height="200" />
</default-constraints>
</item>
<item class="javax.swing.JSpinner" icon="/com/intellij/uiDesigner/icons/spinner.png" removable="false" auto-create-binding="true" can-attach-label="true">
<default-constraints vsize-policy="0" hsize-policy="6" anchor="8" fill="1" />
</item>
<item class="javax.swing.JSlider" icon="/com/intellij/uiDesigner/icons/slider.png" removable="false" auto-create-binding="true" can-attach-label="false">
<default-constraints vsize-policy="0" hsize-policy="6" anchor="8" fill="1" />
</item>
<item class="javax.swing.JSeparator" icon="/com/intellij/uiDesigner/icons/separator.png" removable="false" auto-create-binding="false" can-attach-label="false">
<default-constraints vsize-policy="6" hsize-policy="6" anchor="0" fill="3" />
</item>
<item class="javax.swing.JProgressBar" icon="/com/intellij/uiDesigner/icons/progressbar.png" removable="false" auto-create-binding="true" can-attach-label="false">
<default-constraints vsize-policy="0" hsize-policy="6" anchor="0" fill="1" />
</item>
<item class="javax.swing.JToolBar" icon="/com/intellij/uiDesigner/icons/toolbar.png" removable="false" auto-create-binding="false" can-attach-label="false">
<default-constraints vsize-policy="0" hsize-policy="6" anchor="0" fill="1">
<preferred-size width="-1" height="20" />
</default-constraints>
</item>
<item class="javax.swing.JToolBar$Separator" icon="/com/intellij/uiDesigner/icons/toolbarSeparator.png" removable="false" auto-create-binding="false" can-attach-label="false">
<default-constraints vsize-policy="0" hsize-policy="0" anchor="0" fill="1" />
</item>
<item class="javax.swing.JScrollBar" icon="/com/intellij/uiDesigner/icons/scrollbar.png" removable="false" auto-create-binding="true" can-attach-label="false">
<default-constraints vsize-policy="6" hsize-policy="0" anchor="0" fill="2" />
</item>
</group>
</component>
</project>

6
.idea/vcs.xml generated Normal file
View File

@@ -0,0 +1,6 @@
<?xml version="1.0" encoding="UTF-8"?>
<project version="4">
<component name="VcsDirectoryMappings">
<mapping directory="$PROJECT_DIR$" vcs="Git" />
</component>
</project>