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Update readme with CLI arguments

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efischer
2022-02-27 17:00:54 -06:00
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readme.md
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@@ -51,7 +51,7 @@ For example, to run the program with 32 gigabytes of memory, use the command:
There are a number of command line options, to allow the program to be used in shell scripts. For a full list, There are a number of command line options, to allow the program to be used in shell scripts. For a full list,
use the -help flag: use the -help flag:
`java -jar BiGpairSEQ_SIM -help` `java -jar BiGpairSEQ_SIM.jar -help`
If no command line arguments are given, BiGpairSEQ_Sim will launch with an interactive, menu-driven CLI for If no command line arguments are given, BiGpairSEQ_Sim will launch with an interactive, menu-driven CLI for
generating files and simulating TCR pairing. The main menu looks like this: generating files and simulating TCR pairing. The main menu looks like this: