Update readme with CLI arguments
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@@ -51,7 +51,7 @@ For example, to run the program with 32 gigabytes of memory, use the command:
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There are a number of command line options, to allow the program to be used in shell scripts. For a full list,
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use the -help flag:
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`java -jar BiGpairSEQ_SIM -help`
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`java -jar BiGpairSEQ_SIM.jar -help`
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If no command line arguments are given, BiGpairSEQ_Sim will launch with an interactive, menu-driven CLI for
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generating files and simulating TCR pairing. The main menu looks like this:
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