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Realized how to store graph in memory

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efischer
2022-02-22 19:42:35 -06:00
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@@ -239,8 +239,9 @@ slightly less time than the simulation itself. Real elapsed time from start to f
## TODO
* ~~Try invoking GC at end of workloads to reduce paging to disk~~ DONE
* ~~Hold graph data in memory until another graph is read-in?~~ ABANDONED
* *No, this won't work, because BiGpairSEQ simulations alter the underlying graph based on filtering constraints. Changes would cascade with multiple experiments.*
* Hold graph data in memory until another graph is read-in? ~~ABANDONED~~ UNABANDONED
* ~~*No, this won't work, because BiGpairSEQ simulations alter the underlying graph based on filtering constraints. Changes would cascade with multiple experiments.*~~
* Might have figured out a way to do it, by taking edges out and then putting them back into the graph. This may actually be possible. If so, awesome.
* See if there's a reasonable way to reformat Sample Plate files so that wells are columns instead of rows.
* ~~Problem is variable number of cells in a well~~
* ~~Apache Commons CSV library writes entries a row at a time~~