362 Commits

Author SHA1 Message Date
efischer b1155f8100 Format -help CLI option 2022-02-27 16:53:46 -06:00
efischer 12b003a69f Add -help CLI option 2022-02-27 16:45:30 -06:00
efischer 32c5bcaaff Deactivate file I/O announcement for CLI 2022-02-27 16:16:24 -06:00
efischer 2485ac4cf6 Add getters to MatchingResult 2022-02-27 16:15:26 -06:00
efischer 05556bce0c Add units to metadata 2022-02-27 16:08:59 -06:00
efischer a822f69ea4 Control verbose output 2022-02-27 16:07:17 -06:00
efischer 3d1f8668ee Control verbose output 2022-02-27 16:03:57 -06:00
efischer 40c743308b Initialize wells 2022-02-27 15:54:47 -06:00
efischer 5246cc4a0c Re-implement command line options 2022-02-27 15:35:07 -06:00
efischer a5f7c0641d Refactor for better encapsulation with CellSamples 2022-02-27 14:51:53 -06:00
efischer 8ebfc1469f Refactor plate to fill its own wells in its constructor 2022-02-27 14:25:53 -06:00
efischer b53f5f1cc0 Refactor plate to fill its own wells in its constructor 2022-02-27 14:17:16 -06:00
efischer 974d2d650c Refactor plate to fill its own wells in its constructor 2022-02-27 14:17:11 -06:00
efischer 6b5837e6ce Add Vose's alias method to to-dos 2022-02-27 11:46:11 -06:00
efischer b4cc240048 Update Readme v1.5 2022-02-26 11:03:31 -06:00
efischer ff72c9b359 Update Readme 2022-02-26 11:02:23 -06:00
efischer 88eb8aca50 Update Readme 2022-02-26 11:01:44 -06:00
efischer 98bf452891 Update Readme 2022-02-26 11:01:20 -06:00
efischer c2db4f87c1 Update Readme 2022-02-26 11:00:18 -06:00
efischer 8935407ade Get rid of GraphML reader, those files are larger than serialized files 2022-02-26 10:38:10 -06:00
efischer 9fcc20343d Fix GraphML writer 2022-02-26 10:36:00 -06:00
efischer 817fe51708 Code cleanup 2022-02-26 09:56:46 -06:00
efischer 1ea68045ce Refactor cdr3 matching to use new Vertex class 2022-02-26 09:49:16 -06:00
efischer 75b2aa9553 testing graph attributes 2022-02-26 08:58:52 -06:00
efischer b3dc10f287 add graph attributes to graphml writer 2022-02-26 08:15:48 -06:00
efischer fb8d8d8785 make heap type an enum 2022-02-26 08:15:31 -06:00
efischer ab437512e9 make Vertex serializable 2022-02-26 07:45:36 -06:00
efischer 7b03a3cce8 bugfix 2022-02-26 07:35:34 -06:00
efischer f032d3e852 rewrite GraphML importer/exporter 2022-02-26 07:34:07 -06:00
efischer b604b1d3cd Changing graph to use Vertex class 2022-02-26 06:19:08 -06:00
efischer e4d094d796 Adding GraphML output to options menu 2022-02-24 17:22:07 -06:00
efischer f385ebc31f Update vertex class 2022-02-24 16:25:01 -06:00
efischer 8745550e11 add MWM algorithm type to matching metadata 2022-02-24 16:24:48 -06:00
efischer 41805135b3 remove unused import 2022-02-24 16:04:30 -06:00
efischer 373a5e02f9 Refactor to make CellSample class more self-contained 2022-02-24 16:03:49 -06:00
efischer 7f18311054 fix typos 2022-02-24 15:55:32 -06:00
efischer bcb816c3e6 Reformat TODO 2022-02-24 15:48:10 -06:00
efischer dad0fd35fd Update readme to reflect wells with random population implemented 2022-02-24 15:47:08 -06:00
efischer 35d580cfcf Update readme to reflect wells with random population implemented 2022-02-24 15:45:03 -06:00
efischer ab8d98ed81 Update readme to reflect new default caching behavior. v1.4 2022-02-24 15:39:15 -06:00
efischer 3d9890e16a Change GraphModificationFunctions to only save edges if graph data is cached 2022-02-24 15:32:27 -06:00
efischer dd64ac2731 Change GraphModificationFunctions to interface 2022-02-24 15:18:09 -06:00
efischer a5238624f1 Change default graph caching behavior to false 2022-02-24 15:14:28 -06:00
efischer d8ba42b801 Fix Algorithm Options menu output 2022-02-24 14:59:08 -06:00
efischer 8edd89d784 Added heap type selection, fixed error handling 2022-02-24 14:48:19 -06:00
efischer 2829b88689 Update readme to reflect caching changes v1.3 2022-02-24 12:47:26 -06:00
efischer 108b0ec13f Improve options menu wording 2022-02-24 12:42:09 -06:00
efischer a8b58d3f79 Output new setting when changing options 2022-02-24 12:38:15 -06:00
efischer bf64d57731 implement option menu for file caching 2022-02-24 12:30:47 -06:00
efischer c068c3db3c implement option menu for file caching 2022-02-23 20:35:31 -06:00