Commit Graph

225 Commits

Author SHA1 Message Date
9fb3095f0f Clarify help text 2022-03-01 08:40:34 -06:00
25acf920c2 Add version information 2022-03-01 08:34:35 -06:00
e04d2d6777 Fix typos in help menu 2022-03-01 08:16:06 -06:00
3e41afaa64 bugfix 2022-02-27 19:08:29 -06:00
bc5d67680d Add flag to print metadata to stdout 2022-02-27 17:36:23 -06:00
f2347e8fc2 check verbose flag 2022-02-27 17:35:50 -06:00
c8364d8a6e check verbose flag 2022-02-27 17:34:20 -06:00
b1155f8100 Format -help CLI option 2022-02-27 16:53:46 -06:00
12b003a69f Add -help CLI option 2022-02-27 16:45:30 -06:00
32c5bcaaff Deactivate file I/O announcement for CLI 2022-02-27 16:16:24 -06:00
2485ac4cf6 Add getters to MatchingResult 2022-02-27 16:15:26 -06:00
05556bce0c Add units to metadata 2022-02-27 16:08:59 -06:00
a822f69ea4 Control verbose output 2022-02-27 16:07:17 -06:00
3d1f8668ee Control verbose output 2022-02-27 16:03:57 -06:00
40c743308b Initialize wells 2022-02-27 15:54:47 -06:00
5246cc4a0c Re-implement command line options 2022-02-27 15:35:07 -06:00
a5f7c0641d Refactor for better encapsulation with CellSamples 2022-02-27 14:51:53 -06:00
8ebfc1469f Refactor plate to fill its own wells in its constructor 2022-02-27 14:25:53 -06:00
b53f5f1cc0 Refactor plate to fill its own wells in its constructor 2022-02-27 14:17:16 -06:00
974d2d650c Refactor plate to fill its own wells in its constructor 2022-02-27 14:17:11 -06:00
8935407ade Get rid of GraphML reader, those files are larger than serialized files 2022-02-26 10:38:10 -06:00
9fcc20343d Fix GraphML writer 2022-02-26 10:36:00 -06:00
817fe51708 Code cleanup 2022-02-26 09:56:46 -06:00
1ea68045ce Refactor cdr3 matching to use new Vertex class 2022-02-26 09:49:16 -06:00
75b2aa9553 testing graph attributes 2022-02-26 08:58:52 -06:00
b3dc10f287 add graph attributes to graphml writer 2022-02-26 08:15:48 -06:00
fb8d8d8785 make heap type an enum 2022-02-26 08:15:31 -06:00
ab437512e9 make Vertex serializable 2022-02-26 07:45:36 -06:00
7b03a3cce8 bugfix 2022-02-26 07:35:34 -06:00
f032d3e852 rewrite GraphML importer/exporter 2022-02-26 07:34:07 -06:00
b604b1d3cd Changing graph to use Vertex class 2022-02-26 06:19:08 -06:00
e4d094d796 Adding GraphML output to options menu 2022-02-24 17:22:07 -06:00
f385ebc31f Update vertex class 2022-02-24 16:25:01 -06:00
8745550e11 add MWM algorithm type to matching metadata 2022-02-24 16:24:48 -06:00
41805135b3 remove unused import 2022-02-24 16:04:30 -06:00
373a5e02f9 Refactor to make CellSample class more self-contained 2022-02-24 16:03:49 -06:00
3d9890e16a Change GraphModificationFunctions to only save edges if graph data is cached 2022-02-24 15:32:27 -06:00
dd64ac2731 Change GraphModificationFunctions to interface 2022-02-24 15:18:09 -06:00
a5238624f1 Change default graph caching behavior to false 2022-02-24 15:14:28 -06:00
d8ba42b801 Fix Algorithm Options menu output 2022-02-24 14:59:08 -06:00
8edd89d784 Added heap type selection, fixed error handling 2022-02-24 14:48:19 -06:00
108b0ec13f Improve options menu wording 2022-02-24 12:42:09 -06:00
a8b58d3f79 Output new setting when changing options 2022-02-24 12:38:15 -06:00
bf64d57731 implement option menu for file caching 2022-02-24 12:30:47 -06:00
c068c3db3c implement option menu for file caching 2022-02-23 20:35:31 -06:00
17ae763c6c Generate populations correctly 2022-02-23 10:37:40 -06:00
decdb147a9 Cache everything 2022-02-23 10:30:42 -06:00
74ffbfd8ac make everything use same random number generator 2022-02-23 09:29:21 -06:00
08699ce8ce Change output order to match interactive UI 2022-02-23 08:56:09 -06:00
69b0cc535c Error checking 2022-02-23 08:55:07 -06:00