eugenefischer
|
57fe9c1619
|
Update graph modification functions to work with edges directly
|
2025-04-10 12:42:19 -05:00 |
|
eugenefischer
|
a43ee469ea
|
implement Zipf distribution
|
2025-04-09 14:32:02 -05:00 |
|
eugenefischer
|
fbc0496675
|
update readme and default heap type
|
2025-04-09 11:18:21 -05:00 |
|
eugenefischer
|
3d302cf8ad
|
initial commit of stub of integer weight scaling algorithm
|
2025-03-27 13:42:27 -05:00 |
|
eugenefischer
|
3c2ec9002e
|
Add field for algorithm type, methods to set algorithm type
|
2022-10-22 14:13:31 -05:00 |
|
eugenefischer
|
c0dd2d31f2
|
Update version number
|
2022-10-01 15:21:33 -05:00 |
|
eugenefischer
|
457d643477
|
Make calculation of p-values optional, defaulting to off
|
2022-09-30 03:17:58 -05:00 |
|
eugenefischer
|
b6218c3ed3
|
update version
|
2022-09-29 00:53:11 -05:00 |
|
eugenefischer
|
8a8c89c9ba
|
revert options menu
|
2022-09-26 14:24:58 -05:00 |
|
eugenefischer
|
86371668d5
|
Add menu option to activate simulation of read depth and sequence read errors
|
2022-09-26 13:47:19 -05:00 |
|
eugenefischer
|
489369f533
|
Add flag to simulate read depth
|
2022-09-26 00:42:23 -05:00 |
|
eugenefischer
|
d1a56c3578
|
Hand-merge of some things from Dev_Vertex branch that didn't make it in for some reason
|
2022-09-25 19:07:25 -05:00 |
|
eugenefischer
|
16daf02dd6
|
Merge branch 'Dev_Vertex'
# Conflicts:
# src/main/java/GraphModificationFunctions.java
# src/main/java/GraphWithMapData.java
# src/main/java/Simulator.java
# src/main/java/Vertex.java
|
2022-09-25 18:33:26 -05:00 |
|
eugenefischer
|
7b61d2c0d7
|
Revert "update version number"
This reverts commit e4e5a1f979.
|
2022-09-25 14:34:31 -05:00 |
|
eugenefischer
|
8ee1c5903e
|
Merge branch 'master' into Dev_Vertex
# Conflicts:
# src/main/java/GraphMLFileReader.java
# src/main/java/InteractiveInterface.java
# src/main/java/Simulator.java
|
2022-09-25 14:18:56 -05:00 |
|
eugenefischer
|
e4e5a1f979
|
update version number
|
2022-09-22 00:00:02 -05:00 |
|
|
|
25acf920c2
|
Add version information
|
2022-03-01 08:34:35 -06:00 |
|
|
|
5246cc4a0c
|
Re-implement command line options
|
2022-02-27 15:35:07 -06:00 |
|
|
|
75b2aa9553
|
testing graph attributes
|
2022-02-26 08:58:52 -06:00 |
|
|
|
fb8d8d8785
|
make heap type an enum
|
2022-02-26 08:15:31 -06:00 |
|
|
|
e4d094d796
|
Adding GraphML output to options menu
|
2022-02-24 17:22:07 -06:00 |
|
|
|
a5238624f1
|
Change default graph caching behavior to false
|
2022-02-24 15:14:28 -06:00 |
|
|
|
8edd89d784
|
Added heap type selection, fixed error handling
|
2022-02-24 14:48:19 -06:00 |
|
|
|
a8b58d3f79
|
Output new setting when changing options
|
2022-02-24 12:38:15 -06:00 |
|
|
|
bf64d57731
|
implement option menu for file caching
|
2022-02-24 12:30:47 -06:00 |
|
|
|
c068c3db3c
|
implement option menu for file caching
|
2022-02-23 20:35:31 -06:00 |
|
|
|
decdb147a9
|
Cache everything
|
2022-02-23 10:30:42 -06:00 |
|
|
|
74ffbfd8ac
|
make everything use same random number generator
|
2022-02-23 09:29:21 -06:00 |
|
|
|
f904cf6672
|
add more data caching code
|
2022-02-23 08:13:06 -06:00 |
|
|
|
68ee9e4bb6
|
Implemented storing graphs in memory for multiple pairing experiments
|
2022-02-22 21:30:00 -06:00 |
|
|
|
906c06062f
|
Added metadata to MatchingResult to enable CLI options
|
2022-02-22 18:36:30 -06:00 |
|
|
|
90ae2ff474
|
Re-implemeting CLI options (in progress)
|
2022-02-22 17:37:00 -06:00 |
|
