eugenefischer
|
a43ee469ea
|
implement Zipf distribution
|
2025-04-09 14:32:02 -05:00 |
|
eugenefischer
|
e686d4957b
|
disable selection of the scaling integer weight MWM algorithm via the interactive interface
|
2025-04-09 11:20:52 -05:00 |
|
eugenefischer
|
0071cafbbd
|
Rough implementation, missing final dual adjustment step, and may have other bugs as well as it does not yet output a maximum weight matching
|
2025-04-09 10:17:13 -05:00 |
|
eugenefischer
|
3d302cf8ad
|
initial commit of stub of integer weight scaling algorithm
|
2025-03-27 13:42:27 -05:00 |
|
eugenefischer
|
4b9d7f8494
|
Add option to select matching algorithm type, rename types in output
|
2022-10-22 14:59:24 -05:00 |
|
eugenefischer
|
e7e85a4542
|
Comment out questionable claim
|
2022-10-01 15:44:29 -05:00 |
|
eugenefischer
|
457d643477
|
Make calculation of p-values optional, defaulting to off
|
2022-09-30 03:17:58 -05:00 |
|
eugenefischer
|
9dacd8cd34
|
Add real sequence collision rate
|
2022-09-28 17:43:21 -05:00 |
|
eugenefischer
|
856063529b
|
Read depth simulation is now compatible with plate caching
|
2022-09-28 12:47:00 -05:00 |
|
eugenefischer
|
88b6c79caa
|
Refactor to simplify graph creation code
|
2022-09-28 00:07:59 -05:00 |
|
eugenefischer
|
077af3b46e
|
Clear plate in memory when simulating read depth
|
2022-09-26 23:17:10 -05:00 |
|
eugenefischer
|
199c81f983
|
Implement read count for vertices
|
2022-09-26 19:42:19 -05:00 |
|
eugenefischer
|
36c628cde5
|
Add code to simulate read depth
|
2022-09-26 16:52:56 -05:00 |
|
eugenefischer
|
1ddac63b0a
|
Add exception handling
|
2022-09-26 14:28:35 -05:00 |
|
eugenefischer
|
e795b4cdd0
|
Add read depth option to interface
|
2022-09-26 14:25:47 -05:00 |
|
eugenefischer
|
86371668d5
|
Add menu option to activate simulation of read depth and sequence read errors
|
2022-09-26 13:47:19 -05:00 |
|
eugenefischer
|
d1a56c3578
|
Hand-merge of some things from Dev_Vertex branch that didn't make it in for some reason
|
2022-09-25 19:07:25 -05:00 |
|
eugenefischer
|
61d1eb3eb1
|
Revert "Reword output message"
This reverts commit 63317f2aa0.
|
2022-09-25 14:34:31 -05:00 |
|
eugenefischer
|
cb41b45204
|
Revert "Reword option menu item"
This reverts commit 06e72314b0.
|
2022-09-25 14:34:31 -05:00 |
|
eugenefischer
|
06e72314b0
|
Reword option menu item
|
2022-09-21 21:43:47 -05:00 |
|
eugenefischer
|
63317f2aa0
|
Reword output message
|
2022-09-21 18:08:52 -05:00 |
|
|
|
25acf920c2
|
Add version information
|
2022-03-01 08:34:35 -06:00 |
|
|
|
32c5bcaaff
|
Deactivate file I/O announcement for CLI
|
2022-02-27 16:16:24 -06:00 |
|
|
|
a5f7c0641d
|
Refactor for better encapsulation with CellSamples
|
2022-02-27 14:51:53 -06:00 |
|
|
|
8ebfc1469f
|
Refactor plate to fill its own wells in its constructor
|
2022-02-27 14:25:53 -06:00 |
|
|
|
b53f5f1cc0
|
Refactor plate to fill its own wells in its constructor
|
2022-02-27 14:17:16 -06:00 |
|
|
|
9fcc20343d
|
Fix GraphML writer
|
2022-02-26 10:36:00 -06:00 |
|
|
|
e4d094d796
|
Adding GraphML output to options menu
|
2022-02-24 17:22:07 -06:00 |
|
|
|
373a5e02f9
|
Refactor to make CellSample class more self-contained
|
2022-02-24 16:03:49 -06:00 |
|
|
|
d8ba42b801
|
Fix Algorithm Options menu output
|
2022-02-24 14:59:08 -06:00 |
|
|
|
8edd89d784
|
Added heap type selection, fixed error handling
|
2022-02-24 14:48:19 -06:00 |
|
|
|
108b0ec13f
|
Improve options menu wording
|
2022-02-24 12:42:09 -06:00 |
|
|
|
bf64d57731
|
implement option menu for file caching
|
2022-02-24 12:30:47 -06:00 |
|
|
|
c068c3db3c
|
implement option menu for file caching
|
2022-02-23 20:35:31 -06:00 |
|
|
|
17ae763c6c
|
Generate populations correctly
|
2022-02-23 10:37:40 -06:00 |
|
|
|
decdb147a9
|
Cache everything
|
2022-02-23 10:30:42 -06:00 |
|
|
|
74ffbfd8ac
|
make everything use same random number generator
|
2022-02-23 09:29:21 -06:00 |
|
|
|
69b0cc535c
|
Error checking
|
2022-02-23 08:55:07 -06:00 |
|
|
|
dd2164c250
|
implement sample plates with random well populations
|
2022-02-23 08:14:17 -06:00 |
|
|
|
8e9a250890
|
Cache graph data on creation
|
2022-02-22 22:23:55 -06:00 |
|
|
|
1630f9ccba
|
Moved I/O alert to file reader
|
2022-02-22 22:11:50 -06:00 |
|
|
|
a7afeb6119
|
bugfixes
|
2022-02-22 22:10:09 -06:00 |
|
|
|
68ee9e4bb6
|
Implemented storing graphs in memory for multiple pairing experiments
|
2022-02-22 21:30:00 -06:00 |
|
|
|
875f457a2d
|
reimplement CLI (in progress)
|
2022-02-22 19:42:23 -06:00 |
|
|
|
906c06062f
|
Added metadata to MatchingResult to enable CLI options
|
2022-02-22 18:36:30 -06:00 |
|
|
|
90ae2ff474
|
Re-implemeting CLI options (in progress)
|
2022-02-22 17:37:00 -06:00 |
|
