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2 Commits
v4.1
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f1e4c4f194
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f1e4c4f194 | ||
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b6218c3ed3 |
@@ -16,7 +16,7 @@ public class BiGpairSEQ {
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private static HeapType priorityQueueHeapType = HeapType.FIBONACCI;
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private static HeapType priorityQueueHeapType = HeapType.FIBONACCI;
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private static boolean outputBinary = true;
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private static boolean outputBinary = true;
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private static boolean outputGraphML = false;
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private static boolean outputGraphML = false;
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private static final String version = "version 3.0";
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private static final String version = "version 4.1";
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public static void main(String[] args) {
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public static void main(String[] args) {
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if (args.length == 0) {
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if (args.length == 0) {
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@@ -69,10 +69,6 @@ public class Simulator implements GraphModificationFunctions {
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if(verbose){System.out.println("Remaining alpha sequence count: " + alphaSequences.size());}
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if(verbose){System.out.println("Remaining alpha sequence count: " + alphaSequences.size());}
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if(verbose){System.out.println("Remaining beta sequence count: " + betaSequences.size());}
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if(verbose){System.out.println("Remaining beta sequence count: " + betaSequences.size());}
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}
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}
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int pairableAlphaCount = alphaSequences.size();
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if(verbose){System.out.println("Remaining alpha sequence count: " + pairableAlphaCount);}
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int pairableBetaCount = betaSequences.size();
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if(verbose){System.out.println("Remaining beta sequence count: " + pairableBetaCount);}
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//construct the graph. For simplicity, going to make
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//construct the graph. For simplicity, going to make
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if(verbose){System.out.println("Making vertex maps");}
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if(verbose){System.out.println("Making vertex maps");}
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