eugenefischer 7744586e79 change frequency of garbage collection requests

2025-04-10 20:07:34 -05:00

..

META-INF

Add .jar manifest to repo

2022-02-22 21:45:46 -06:00

AlgorithmType.java

initial commit of stub of integer weight scaling algorithm

2025-03-27 13:42:27 -05:00

BiGpairSEQ.java

Update graph modification functions to work with edges directly

2025-04-10 12:42:19 -05:00

CellFileReader.java

Add sample cell filename, cell sample size, and sample plate size to metadata

2022-09-30 02:58:15 -05:00

CellFileWriter.java

Refactor sequences to be strings instead of integers, to make simulating read errors easier

2022-09-26 13:37:48 -05:00

CellSample.java

Add sample cell filename, cell sample size, and sample plate size to metadata

2022-09-30 02:58:15 -05:00

CommandLineInterface.java

update readme and add Zipf exponent option to CLI

2025-04-09 16:16:46 -05:00

DistributionType.java

implement Zipf distribution

2025-04-09 14:32:02 -05:00

Equations.java

make everything use same random number generator

2022-02-23 09:29:21 -06:00

GraphDataObjectReader.java

Add detail to error message

2022-03-01 15:24:14 -06:00

GraphDataObjectWriter.java

Control verbose output

2022-02-27 16:03:57 -06:00

GraphMLFileWriter.java

Add sample cell filename, cell sample size, and sample plate size to metadata

2022-09-30 02:58:15 -05:00

GraphModificationFunctions.java

fix concurrent modification bug

2025-04-10 13:33:47 -05:00

GraphWithMapData.java

Add sample cell filename, cell sample size, and sample plate size to metadata

2022-09-30 02:58:15 -05:00

HeapType.java

make heap type an enum

2022-02-26 08:15:31 -06:00

InteractiveInterface.java

implement Zipf distribution

2025-04-09 14:32:02 -05:00

MatchingFileWriter.java

Implemented storing graphs in memory for multiple pairing experiments

2022-02-22 21:30:00 -06:00

MatchingResult.java

clean up metadata

2022-09-27 12:15:12 -05:00

MaximumIntegerWeightBipartiteAuctionMatching.java

initial commit of stub of integer weight scaling algorithm

2025-03-27 13:42:27 -05:00

MaximumIntegerWeightBipartiteMatching.java

Rough implementation, missing final dual adjustment step, and may have other bugs as well as it does not yet output a maximum weight matching

2025-04-09 10:17:13 -05:00

MaximumWeightBipartiteLookBackAuctionMatching.java

Lookback AA implementation, doesn't currently work

2023-04-09 20:45:03 -05:00

Plate.java

refactor to construct the bipartite graph directly, rather than by using an adjacency matrix and a graph generator.

2025-04-10 11:47:15 -05:00

PlateFileReader.java

Refactor sequences to be strings instead of integers, to make simulating read errors easier

2022-09-26 13:37:48 -05:00

PlateFileWriter.java

implement Zipf distribution

2025-04-09 14:32:02 -05:00

SequenceRecord.java

Add method to remove a well from the SequenceRecord (git committed as past self due to IDE misclick)

2022-09-29 16:03:10 -05:00

SequenceType.java

Hand-merge of some things from Dev_Vertex branch that didn't make it in for some reason

2022-09-25 19:07:25 -05:00

Simulator.java

change frequency of garbage collection requests

2025-04-10 20:07:34 -05:00

Vertex.java

add getter/setter for potential

2022-10-14 17:32:37 -05:00