113 lines
3.6 KiB
Java
113 lines
3.6 KiB
Java
import java.time.Duration;
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import java.util.ArrayList;
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import java.util.List;
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import java.util.Map;
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public class MatchingResult {
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private final Map<String, String> metadata;
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private final List<String> comments;
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private final List<String> headers;
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private final List<List<String>> allResults;
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private final Map<String, String> matchMap;
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private final Duration time;
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public MatchingResult(Map<String, String> metadata, List<String> headers,
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List<List<String>> allResults, Map<String, String>matchMap, Duration time){
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/*
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* POSSIBLE KEYS FOR METADATA MAP ARE:
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* sample plate filename *
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* graph filename *
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* well populations *
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* total alphas found *
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* total betas found *
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* high overlap threshold *
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* low overlap threshold *
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* maximum occupancy difference *
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* minimum overlap percent *
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* pairing attempt rate *
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* correct pairing count *
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* incorrect pairing count *
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* pairing error rate *
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* simulation time (seconds)
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*/
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this.metadata = metadata;
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this.comments = new ArrayList<>();
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for (String key : metadata.keySet()) {
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comments.add(key +": " + metadata.get(key));
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}
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this.headers = headers;
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this.allResults = allResults;
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this.matchMap = matchMap;
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this.time = time;
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}
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public Map<String, String> getMetadata() {return metadata;}
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public List<String> getComments() {
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return comments;
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}
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public List<List<String>> getAllResults() {
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return allResults;
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}
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public List<String> getHeaders() {
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return headers;
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}
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public Map<String, String> getMatchMap() {
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return matchMap;
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}
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public Duration getTime() {
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return time;
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}
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public String getPlateFilename() {
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return metadata.get("sample plate filename");
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}
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public String getGraphFilename() {
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return metadata.get("graph filename");
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}
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public Integer[] getWellPopulations() {
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List<Integer> wellPopulations = new ArrayList<>();
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String popString = metadata.get("well populations");
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for (String p : popString.split(", ")) {
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wellPopulations.add(Integer.parseInt(p));
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}
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Integer[] popArray = new Integer[wellPopulations.size()];
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return wellPopulations.toArray(popArray);
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}
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public Integer getAlphaCount() {
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return Integer.parseInt(metadata.get("total alpha count"));
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}
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public Integer getBetaCount() {
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return Integer.parseInt(metadata.get("total beta count"));
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}
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public Integer getHighOverlapThreshold() { return Integer.parseInt(metadata.get("high overlap threshold"));}
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public Integer getLowOverlapThreshold() { return Integer.parseInt(metadata.get("low overlap threshold"));}
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public Integer getMaxOccupancyDifference() { return Integer.parseInt(metadata.get("maximum occupancy difference"));}
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public Integer getMinOverlapPercent() { return Integer.parseInt(metadata.get("minimum overlap percent"));}
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public Double getPairingAttemptRate() { return Double.parseDouble(metadata.get("pairing attempt rate"));}
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public Integer getCorrectPairingCount() { return Integer.parseInt(metadata.get("correct pairing count"));}
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public Integer getIncorrectPairingCount() { return Integer.parseInt(metadata.get("incorrect pairing count"));}
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public Double getPairingErrorRate() { return Double.parseDouble(metadata.get("pairing error rate"));}
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public String getSimulationTime() { return metadata.get("simulation time (seconds)"); }
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}
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