efischer 4c872ed48e Add optional stdout print flags

2022-03-01 15:27:04 -06:00

..

META-INF

Add .jar manifest to repo

2022-02-22 21:45:46 -06:00

BiGpairSEQ.java

Add version information

2022-03-01 08:34:35 -06:00

CellFileReader.java

Cache everything

2022-02-23 10:30:42 -06:00

CellFileWriter.java

Implemented parameter for CDR1 frequency

2021-11-18 11:55:54 -06:00

CellSample.java

Refactor to make CellSample class more self-contained

2022-02-24 16:03:49 -06:00

CommandLineInterface.java

Add optional stdout print flags

2022-03-01 15:27:04 -06:00

Equations.java

make everything use same random number generator

2022-02-23 09:29:21 -06:00

GraphDataObjectReader.java

Add detail to error message

2022-03-01 15:24:14 -06:00

GraphDataObjectWriter.java

Control verbose output

2022-02-27 16:03:57 -06:00

GraphMLFileWriter.java

Fix GraphML writer

2022-02-26 10:36:00 -06:00

GraphModificationFunctions.java

remove unused import

2022-02-24 16:04:30 -06:00

GraphWithMapData.java

change "concentrations" to "populations" for consistency

2022-02-23 08:12:48 -06:00

InteractiveInterface.java

Add version information

2022-03-01 08:34:35 -06:00

MatchingFileWriter.java

Implemented storing graphs in memory for multiple pairing experiments

2022-02-22 21:30:00 -06:00

MatchingResult.java

Add getters to MatchingResult

2022-02-27 16:15:26 -06:00

Plate.java

Initialize wells

2022-02-27 15:54:47 -06:00

PlateFileReader.java

Refactor plate to fill its own wells in its constructor

2022-02-27 14:25:53 -06:00

PlateFileWriter.java

create populations string correctly

2022-02-23 08:11:01 -06:00

Simulator.java

Check for finite pairing error rate

2022-03-01 09:01:53 -06:00

Vertex.java

Update vertex class

2022-02-24 16:25:01 -06:00