eugenefischer 457d643477 Make calculation of p-values optional, defaulting to off

2022-09-30 03:17:58 -05:00

..

META-INF

Add .jar manifest to repo

2022-02-22 21:45:46 -06:00

BiGpairSEQ.java

Make calculation of p-values optional, defaulting to off

2022-09-30 03:17:58 -05:00

CellFileReader.java

Add sample cell filename, cell sample size, and sample plate size to metadata

2022-09-30 02:58:15 -05:00

CellFileWriter.java

Refactor sequences to be strings instead of integers, to make simulating read errors easier

2022-09-26 13:37:48 -05:00

CellSample.java

Add sample cell filename, cell sample size, and sample plate size to metadata

2022-09-30 02:58:15 -05:00

CommandLineInterface.java

Make calculation of p-values optional, defaulting to off

2022-09-30 03:17:58 -05:00

Equations.java

make everything use same random number generator

2022-02-23 09:29:21 -06:00

GraphDataObjectReader.java

Add detail to error message

2022-03-01 15:24:14 -06:00

GraphDataObjectWriter.java

Control verbose output

2022-02-27 16:03:57 -06:00

GraphMLFileWriter.java

Add sample cell filename, cell sample size, and sample plate size to metadata

2022-09-30 02:58:15 -05:00

GraphModificationFunctions.java

spacing

2022-09-26 23:38:56 -05:00

GraphWithMapData.java

Add sample cell filename, cell sample size, and sample plate size to metadata

2022-09-30 02:58:15 -05:00

HeapType.java

make heap type an enum

2022-02-26 08:15:31 -06:00

InteractiveInterface.java

Make calculation of p-values optional, defaulting to off

2022-09-30 03:17:58 -05:00

MatchingFileWriter.java

Implemented storing graphs in memory for multiple pairing experiments

2022-02-22 21:30:00 -06:00

MatchingResult.java

clean up metadata

2022-09-27 12:15:12 -05:00

Plate.java

Change real sequence collision so it isn't biased toward sequences in the earlier wells.

2022-09-28 23:15:55 -05:00

PlateFileReader.java

Refactor sequences to be strings instead of integers, to make simulating read errors easier

2022-09-26 13:37:48 -05:00

PlateFileWriter.java

Refactor sequences to be strings instead of integers, to make simulating read errors easier

2022-09-26 13:37:48 -05:00

SequenceRecord.java

Add method to remove a well from the SequenceRecord (git committed as past self due to IDE misclick)

2022-09-29 16:03:10 -05:00

SequenceType.java

Hand-merge of some things from Dev_Vertex branch that didn't make it in for some reason

2022-09-25 19:07:25 -05:00

Simulator.java

Make calculation of p-values optional, defaulting to off

2022-09-30 03:17:58 -05:00

Vertex.java

Bugfix

2022-09-28 12:58:14 -05:00