efischer 5246cc4a0c Re-implement command line options

2022-02-27 15:35:07 -06:00

..

META-INF

Add .jar manifest to repo

2022-02-22 21:45:46 -06:00

BiGpairSEQ.java

Re-implement command line options

2022-02-27 15:35:07 -06:00

CellFileReader.java

Cache everything

2022-02-23 10:30:42 -06:00

CellFileWriter.java

Implemented parameter for CDR1 frequency

2021-11-18 11:55:54 -06:00

CellSample.java

Refactor to make CellSample class more self-contained

2022-02-24 16:03:49 -06:00

CommandLineInterface.java

Re-implement command line options

2022-02-27 15:35:07 -06:00

Equations.java

make everything use same random number generator

2022-02-23 09:29:21 -06:00

GraphDataObjectReader.java

Moved I/O alert to file reader

2022-02-22 22:10:31 -06:00

GraphDataObjectWriter.java

Moved I/O alert to file reader

2022-02-22 22:11:50 -06:00

GraphMLFileWriter.java

Fix GraphML writer

2022-02-26 10:36:00 -06:00

GraphModificationFunctions.java

remove unused import

2022-02-24 16:04:30 -06:00

GraphWithMapData.java

change "concentrations" to "populations" for consistency

2022-02-23 08:12:48 -06:00

InteractiveInterface.java

Refactor for better encapsulation with CellSamples

2022-02-27 14:51:53 -06:00

MatchingFileWriter.java

Implemented storing graphs in memory for multiple pairing experiments

2022-02-22 21:30:00 -06:00

MatchingResult.java

Implemented storing graphs in memory for multiple pairing experiments

2022-02-22 21:30:00 -06:00

Plate.java

Re-implement command line options

2022-02-27 15:35:07 -06:00

PlateFileReader.java

Refactor plate to fill its own wells in its constructor

2022-02-27 14:25:53 -06:00

PlateFileWriter.java

create populations string correctly

2022-02-23 08:11:01 -06:00

Simulator.java

Refactor for better encapsulation with CellSamples

2022-02-27 14:51:53 -06:00

Vertex.java

Update vertex class

2022-02-24 16:25:01 -06:00