BiGpairSEQ/src/main/java/MatchingResult.java

import java.time.Duration;
import java.util.ArrayList;
import java.util.List;
import java.util.Map;

public class MatchingResult {
    private final String sourceFile;
    private final Map<String, String> metadata;
    private final List<String> comments;
    private final List<String> headers;
    private final List<List<String>> allResults;
    private final Map<Integer, Integer> matchMap;
    private final Duration time;

    public MatchingResult(String sourceFileName, Map<String, String> metadata, List<String> headers,
                          List<List<String>> allResults, Map<Integer, Integer>matchMap, Duration time){
        this.sourceFile = sourceFileName;
        /*
         * POSSIBLE KEYS FOR METADATA MAP ARE:
         * sample plate filename
         * graph filename
         * well populations
         * total alphas found
         * total betas found
         * high overlap threshold
         * low overlap threshold
         * maximum occupancy difference
         * minimum overlap percent
         * pairing attempt rate
         * correct pairing count
         * incorrect pairing count
         * pairing error rate
         * simulation time
         */
        this.metadata = metadata;
        this.comments = new ArrayList<>();
        for (String key : metadata.keySet()) {
            comments.add(key +": " + metadata.get(key));
        }
        this.headers = headers;
        this.allResults = allResults;
        this.matchMap = matchMap;
        this.time = time;

    }

    public Map<String, String> getMetadata() {return metadata;}

    public List<String> getComments() {
        return comments;
    }

    public List<List<String>> getAllResults() {
        return allResults;
    }

    public List<String> getHeaders() {
        return headers;
    }

    public Map<Integer, Integer> getMatchMap() {
        return matchMap;
    }

    public Duration getTime() {
        return time;
    }

    public String getSourceFileName() {
        return sourceFile;
    }
}