eugenefischer 96d49d0034 clarifying comment

2023-04-09 19:48:43 -05:00

..

META-INF

Add .jar manifest to repo

2022-02-22 21:45:46 -06:00

AlgorithmType.java

Update algorithm type names

2022-10-22 14:10:00 -05:00

BiGpairSEQ.java

Add field for algorithm type, methods to set algorithm type

2022-10-22 14:13:31 -05:00

CellFileReader.java

Add sample cell filename, cell sample size, and sample plate size to metadata

2022-09-30 02:58:15 -05:00

CellFileWriter.java

Refactor sequences to be strings instead of integers, to make simulating read errors easier

2022-09-26 13:37:48 -05:00

CellSample.java

Add sample cell filename, cell sample size, and sample plate size to metadata

2022-09-30 02:58:15 -05:00

CommandLineInterface.java

Add flag to enable p-value calculation

2022-10-01 14:36:22 -05:00

Equations.java

make everything use same random number generator

2022-02-23 09:29:21 -06:00

GraphDataObjectReader.java

Add detail to error message

2022-03-01 15:24:14 -06:00

GraphDataObjectWriter.java

Control verbose output

2022-02-27 16:03:57 -06:00

GraphMLFileWriter.java

Add sample cell filename, cell sample size, and sample plate size to metadata

2022-09-30 02:58:15 -05:00

GraphModificationFunctions.java

spacing

2022-09-26 23:38:56 -05:00

GraphWithMapData.java

Add sample cell filename, cell sample size, and sample plate size to metadata

2022-09-30 02:58:15 -05:00

HeapType.java

make heap type an enum

2022-02-26 08:15:31 -06:00

InteractiveInterface.java

Add option to select matching algorithm type, rename types in output

2022-10-22 14:59:24 -05:00

MatchingFileWriter.java

Implemented storing graphs in memory for multiple pairing experiments

2022-02-22 21:30:00 -06:00

MatchingResult.java

clean up metadata

2022-09-27 12:15:12 -05:00

MaximumIntegerWeightBipartiteAuctionMatching.java

clarifying comment

2023-04-09 19:48:43 -05:00

Plate.java

Correct sequence count

2022-10-22 16:16:32 -05:00

PlateFileReader.java

Refactor sequences to be strings instead of integers, to make simulating read errors easier

2022-09-26 13:37:48 -05:00

PlateFileWriter.java

Change order of metadata comments

2022-10-22 15:50:35 -05:00

SequenceRecord.java

Add method to remove a well from the SequenceRecord (git committed as past self due to IDE misclick)

2022-09-29 16:03:10 -05:00

SequenceType.java

Hand-merge of some things from Dev_Vertex branch that didn't make it in for some reason

2022-09-25 19:07:25 -05:00

Simulator.java

Bugfixes and streamlining

2022-10-22 17:59:01 -05:00

Vertex.java

add getter/setter for potential

2022-10-14 17:32:37 -05:00