efischer 8e9a250890 Cache graph data on creation

2022-02-22 22:23:55 -06:00

..

META-INF

Add .jar manifest to repo

2022-02-22 21:45:46 -06:00

BiGpairSEQ.java

Implemented storing graphs in memory for multiple pairing experiments

2022-02-22 21:30:00 -06:00

CellFileReader.java

Recording source file names in output files, allowing output of intermediate results

2021-11-18 15:38:29 -06:00

CellFileWriter.java

Implemented parameter for CDR1 frequency

2021-11-18 11:55:54 -06:00

CellSample.java

Implemented parameter for CDR1 frequency

2021-11-18 11:55:54 -06:00

CommandLineInterface.java

reimplement CLI (in progress)

2022-02-22 19:42:23 -06:00

Equations.java

Change "peptide" references in code to "sequence", adding comments

2022-02-21 00:29:34 -06:00

GraphDataObjectReader.java

Moved I/O alert to file reader

2022-02-22 22:10:31 -06:00

GraphDataObjectWriter.java

Moved I/O alert to file reader

2022-02-22 22:11:50 -06:00

GraphMLFileReader.java

Refactor to read/write files of graph and map data

2022-02-19 21:46:01 -06:00

GraphMLFileWriter.java

Refactor to read/write files of graph and map data

2022-02-19 21:46:01 -06:00

GraphModificationFunctions.java

bugfixes

2022-02-22 22:10:09 -06:00

GraphWithMapData.java

Relocate overlap threshold filters

2022-02-20 03:05:56 -06:00

InteractiveInterface.java

Cache graph data on creation

2022-02-22 22:23:55 -06:00

MatchingFileWriter.java

Implemented storing graphs in memory for multiple pairing experiments

2022-02-22 21:30:00 -06:00

MatchingResult.java

Implemented storing graphs in memory for multiple pairing experiments

2022-02-22 21:30:00 -06:00

Plate.java

Added metadata to MatchingResult to enable CLI options

2022-02-22 18:36:30 -06:00

PlateFileReader.java

Revert attempt to switch plate output format. It worked, but introduced a bug in graph filtering I don't want to chase down

2022-02-20 20:45:35 -06:00

PlateFileWriter.java

reimplement CLI (in progress)

2022-02-22 19:42:23 -06:00

Simulator.java

bugfixes

2022-02-22 22:10:09 -06:00

Vertex.java

Refactoring to allow graphs from file

2022-02-19 17:23:55 -06:00