efischer 3d9890e16a Change GraphModificationFunctions to only save edges if graph data is cached

2022-02-24 15:32:27 -06:00

..

META-INF

Add .jar manifest to repo

2022-02-22 21:45:46 -06:00

BiGpairSEQ.java

Change default graph caching behavior to false

2022-02-24 15:14:28 -06:00

CellFileReader.java

Cache everything

2022-02-23 10:30:42 -06:00

CellFileWriter.java

Implemented parameter for CDR1 frequency

2021-11-18 11:55:54 -06:00

CellSample.java

Cache everything

2022-02-23 10:30:42 -06:00

CommandLineInterface.java

Cache everything

2022-02-23 10:30:42 -06:00

Equations.java

make everything use same random number generator

2022-02-23 09:29:21 -06:00

GraphDataObjectReader.java

Moved I/O alert to file reader

2022-02-22 22:10:31 -06:00

GraphDataObjectWriter.java

Moved I/O alert to file reader

2022-02-22 22:11:50 -06:00

GraphMLFileReader.java

Refactor to read/write files of graph and map data

2022-02-19 21:46:01 -06:00

GraphMLFileWriter.java

Refactor to read/write files of graph and map data

2022-02-19 21:46:01 -06:00

GraphModificationFunctions.java

Change GraphModificationFunctions to only save edges if graph data is cached

2022-02-24 15:32:27 -06:00

GraphWithMapData.java

change "concentrations" to "populations" for consistency

2022-02-23 08:12:48 -06:00

InteractiveInterface.java

Fix Algorithm Options menu output

2022-02-24 14:59:08 -06:00

MatchingFileWriter.java

Implemented storing graphs in memory for multiple pairing experiments

2022-02-22 21:30:00 -06:00

MatchingResult.java

Implemented storing graphs in memory for multiple pairing experiments

2022-02-22 21:30:00 -06:00

Plate.java

make everything use same random number generator

2022-02-23 09:29:21 -06:00

PlateFileReader.java

Revert attempt to switch plate output format. It worked, but introduced a bug in graph filtering I don't want to chase down

2022-02-20 20:45:35 -06:00

PlateFileWriter.java

create populations string correctly

2022-02-23 08:11:01 -06:00

Simulator.java

Change GraphModificationFunctions to only save edges if graph data is cached

2022-02-24 15:32:27 -06:00

Vertex.java

Refactoring to allow graphs from file

2022-02-19 17:23:55 -06:00