efischer

efischer pushed to master at efischer/BiGpairSEQ

2022-02-18 23:48:28 +00:00

ce88e170c1 Update readme with max memory flag

efischer pushed to master at efischer/BiGpairSEQ

2022-02-18 23:42:12 +00:00

47e23addfa Do new filtering before matching

efischer pushed to master at efischer/BiGpairSEQ

2022-02-18 23:28:29 +00:00

b9ee31b64c Do new filtering before matching

efischer pushed to master at efischer/BiGpairSEQ

2022-02-18 22:09:36 +00:00

bf32a55e4b Implement matching using jheaps PairingHeap

acff88475b Command line arguments working, need better documentation and error handling

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efischer pushed to master at efischer/Tutoring-APCompSci

2021-12-13 18:08:49 +00:00

90f8161ce1 Directory cleanup

efischer pushed to master at efischer/Tutoring-APCompSci

2021-12-13 18:02:20 +00:00

2880c846f4 Merge branch 'master' of https://gitea.ejsf.synology.me/efischer/Tutoring-APCompSci

3fdeac5456 update gitignore

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efischer pushed to master at efischer/Tutoring-APCompSci

2021-12-13 18:01:51 +00:00

ecc6ab960f Delete '.DS_Store'

efischer pushed to master at efischer/Tutoring-APCompSci

2021-12-13 18:01:03 +00:00

914a6f5891 directory cleanup

efischer pushed to master at efischer/Tutoring-APCompSci

2021-12-13 17:27:34 +00:00

ef6db4b23b Rename flowcharts

efischer pushed to master at efischer/BiGpairSEQ

2021-11-20 16:44:02 +00:00

32593308df Command line arguments for CDR3 matching implemented

981e24011d First attempt at command line arguments

3d0a843cea Adding command line argument parsing library

c09ef27822 Adding command line argument parsing library

2ab93dd4b7 Recording source file names in output files, allowing output of intermediate results

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efischer pushed to master at efischer/BiGpairSEQ

2021-11-18 20:16:56 +00:00

09aa5961f3 New executable build after code refactor.

efischer pushed to master at efischer/BiGpairSEQ

2021-11-18 20:11:12 +00:00

34e96d3b3d Refactor to reduce code repetition

efischer pushed to master at efischer/BiGpairSEQ

2021-11-18 17:58:28 +00:00

2064d7e9fc Implemented parameter for CDR1 frequency

efischer pushed to master at efischer/BiGpairSEQ

2021-11-17 03:27:58 +00:00

4157cfb556 Usage instructions for executable .jar

efischer pushed to master at efischer/BiGpairSEQ

2021-11-17 03:23:13 +00:00

cb6330166f Adding executable .jar

2fee44d3ee removed unused imports

255a3ba66c Added timing to CDR3/CDR1 matching

48510a5b60 Improved efficiency by pre-filtering peptide lists before making and processing graphs

26304e5dff bugfix

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efischer created branch master in efischer/BiGpairSEQ

2021-11-17 03:23:13 +00:00

efischer created repository efischer/BiGpairSEQ

2021-11-17 03:18:46 +00:00