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Add missing filtering code

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efischer
2022-02-19 22:56:38 -06:00
parent 84f7ddb696
commit 0bebbc7602
2 changed files with 9 additions and 1 deletions
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out/artifacts/TCellSim_jar/TCellSim.jar
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src/main/java/Simulator.java
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@@ -163,7 +163,16 @@ public class Simulator {
Map<Integer, Integer> betaWellCounts = data.getBetaWellCounts(); Map<Integer, Integer> betaWellCounts = data.getBetaWellCounts();
SimpleWeightedGraph<Integer, DefaultWeightedEdge> graph = data.getGraph(); SimpleWeightedGraph<Integer, DefaultWeightedEdge> graph = data.getGraph();
//Filter by overlap size
if(verbose){System.out.println("Eliminating edges with weights much less than occupancy values");}
filterByOverlapSize(graph, alphaWellCounts, betaWellCounts, plateVtoAMap, plateVtoBMap, minOverlapPercent);
if(verbose){System.out.println("Edges with weights much less than occupancy values set to 0.0");}
//Filter by relative occupancy
if(verbose){System.out.println("Eliminating edges between vertices of massively different occupancy");}
filterByRelativeOccupancy(graph, alphaWellCounts, betaWellCounts, plateVtoAMap, plateVtoBMap,
maxOccupancyDifference);
if(verbose){System.out.println("Edges between vertices of massively different occupancy set to 0.0");}
//Find Maximum Weighted Matching //Find Maximum Weighted Matching
// if(verbose){System.out.println("Finding maximum weighted matching");} // if(verbose){System.out.println("Finding maximum weighted matching");}
@@ -361,7 +370,6 @@ public class Simulator {
if(verbose){System.out.println("Over- and under-weight edges set to 0.0");} if(verbose){System.out.println("Over- and under-weight edges set to 0.0");}
//Filter by overlap size //Filter by overlap size
if(verbose){System.out.println("Eliminating edges with weights much less than occupancy values");} if(verbose){System.out.println("Eliminating edges with weights much less than occupancy values");}
filterByOverlapSize(graph, alphaWellCounts, betaWellCounts, plateVtoAMap, plateVtoBMap, minOverlapPercent); filterByOverlapSize(graph, alphaWellCounts, betaWellCounts, plateVtoAMap, plateVtoBMap, minOverlapPercent);