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Remove pre-filtering of singleton and saturating sequences

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eugenefischer
2022-09-25 14:55:43 -05:00
parent 8ee1c5903e
commit 1971a96467
1 changed files with 3 additions and 3 deletions
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6
src/main/java/Simulator.java
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@@ -48,9 +48,9 @@ public class Simulator implements GraphModificationFunctions {
if(verbose){System.out.println("Well maps made");} if(verbose){System.out.println("Well maps made");}
if(verbose){System.out.println("Removing singleton sequences and sequences present in all wells.");} //if(verbose){System.out.println("Removing singleton sequences and sequences present in all wells.");}
filterByOccupancyThresholds(allAlphas, 2, numWells - 1); //filterByOccupancyThresholds(allAlphas, 2, numWells - 1);
filterByOccupancyThresholds(allBetas, 2, numWells - 1); //filterByOccupancyThresholds(allBetas, 2, numWells - 1);
if(verbose){System.out.println("Sequences removed");} if(verbose){System.out.println("Sequences removed");}
int pairableAlphaCount = allAlphas.size(); int pairableAlphaCount = allAlphas.size();
if(verbose){System.out.println("Remaining alphas count: " + pairableAlphaCount);} if(verbose){System.out.println("Remaining alphas count: " + pairableAlphaCount);}