Remove outdated comments
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@@ -12,14 +12,6 @@ import java.text.NumberFormat;
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import java.time.Instant;
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import java.time.Instant;
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import java.time.Duration;
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import java.time.Duration;
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import java.util.*;
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import java.util.*;
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/*
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Refactor notes
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What would be necessary to do everything with only one scan through the sample plate?
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I would need to keep a list of sequences (real and spurious), and metadata about each sequence.
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I would need the data:
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* # of each well the sequence appears in
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* Read count in that well
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*/
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//NOTE: "sequence" in method and variable names refers to a peptide sequence from a simulated T cell
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//NOTE: "sequence" in method and variable names refers to a peptide sequence from a simulated T cell
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