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Add flag to simulate read depth

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eugenefischer
2022-09-26 00:42:23 -05:00
parent fbee591273
commit 489369f533
1 changed files with 9 additions and 0 deletions
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9
src/main/java/BiGpairSEQ.java
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@@ -16,6 +16,7 @@ public class BiGpairSEQ {
private static HeapType priorityQueueHeapType = HeapType.FIBONACCI; private static HeapType priorityQueueHeapType = HeapType.FIBONACCI;
private static boolean outputBinary = true; private static boolean outputBinary = true;
private static boolean outputGraphML = false; private static boolean outputGraphML = false;
private static boolean simulateReadDepth = false;
private static final String version = "version 3.0"; private static final String version = "version 3.0";
public static void main(String[] args) { public static void main(String[] args) {
@@ -174,4 +175,12 @@ public class BiGpairSEQ {
public static boolean outputGraphML() {return outputGraphML;} public static boolean outputGraphML() {return outputGraphML;}
public static void setOutputGraphML(boolean b) {outputGraphML = b;} public static void setOutputGraphML(boolean b) {outputGraphML = b;}
public static String getVersion() { return version; } public static String getVersion() { return version; }
public static boolean getSimulateReadDepth() {
return simulateReadDepth;
}
public static void setSimulateReadDepth(boolean simulateReadDepth) {
BiGpairSEQ.simulateReadDepth = simulateReadDepth;
}
} }