remove old testing code
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@@ -51,7 +51,6 @@ public class Plate {
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int section = 0;
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double m;
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int n;
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int test=0;
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while (section < numSections){
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for (int i = 0; i < (size / numSections); i++) {
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List<Integer[]> well = new ArrayList<>();
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@@ -61,13 +60,6 @@ public class Plate {
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m = (Math.log10((1 - rand.nextDouble()))/(-lambda)) * Math.sqrt(cells.size());
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} while (m >= cells.size() || m < 0);
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n = (int) Math.floor(m);
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//n = Equations.getRandomNumber(0, cells.size());
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// was testing generating the cell sample file with exponential dist, then sampling flat here
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//that would be more realistic
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//But would mess up other things in the simulation with how I've coded it.
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if(n > test){
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test = n;
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}
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Integer[] cellToAdd = cells.get(n).clone();
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for(int k = 0; k < cellToAdd.length; k++){
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if(Math.abs(rand.nextDouble()) < error){//error applied to each seqeunce
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@@ -80,7 +72,6 @@ public class Plate {
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}
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section++;
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}
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System.out.println("Highest index: " +test);
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}
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public void fillWells(String sourceFileName, List<Integer[]> cells, double stdDev) {
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