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Restore pre-filtering of singleton and saturating sequences

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eugenefischer
2022-09-22 01:39:13 -05:00
parent e4e5a1f979
commit 5c03909a11
1 changed files with 4 additions and 4 deletions
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8
src/main/java/Simulator.java
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@@ -48,10 +48,10 @@ public class Simulator implements GraphModificationFunctions {
if(verbose){System.out.println("Well maps made");}
// if(verbose){System.out.println("Removing singleton sequences and sequences present in all wells.");}
// filterByOccupancyThresholds(allAlphas, 2, numWells - 1);
// filterByOccupancyThresholds(allBetas, 2, numWells - 1);
// if(verbose){System.out.println("Sequences removed");}
if(verbose){System.out.println("Removing singleton sequences and sequences present in all wells.");}
filterByOccupancyThresholds(allAlphas, 2, numWells - 1);
filterByOccupancyThresholds(allBetas, 2, numWells - 1);
if(verbose){System.out.println("Sequences removed");}
int pairableAlphaCount = allAlphas.size();
if(verbose){System.out.println("Remaining alphas count: " + pairableAlphaCount);}
int pairableBetaCount = allBetas.size();