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update TODO

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eugenefischer
2022-09-21 16:50:00 -05:00
parent 29b844afd2
commit a054c0c20a
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@@ -347,9 +347,9 @@ roughly as though it had a constant well population equal to the plate's average
* ~~Apache Commons CSV library writes entries a row at a time~~ * ~~Apache Commons CSV library writes entries a row at a time~~
* _Got this working, but at the cost of a profoundly strange bug in graph occupancy filtering. Have reverted the repo until I can figure out what caused that. Given how easily Thingiverse transposes CSV matrices in R, might not even be worth fixing. * _Got this working, but at the cost of a profoundly strange bug in graph occupancy filtering. Have reverted the repo until I can figure out what caused that. Given how easily Thingiverse transposes CSV matrices in R, might not even be worth fixing.
* ~~Enable GraphML output in addition to serialized object binaries, for data portability~~ DONE * ~~Enable GraphML output in addition to serialized object binaries, for data portability~~ DONE
* ~~Custom vertex type with attribute for sequence occupancy?~~ ABANDONED * ~~Custom vertex type with attribute for sequence occupancy?~~ DONE
* Advantage: would eliminate the need to use maps to associate vertices with sequences, which would make the code easier to understand. * Advantage: would eliminate the need to use maps to associate vertices with sequences, which would make the code easier to understand.
* Have a branch where this is implemented, but there's a bug that broke matching. Don't currently have time to fix. * ~~Have a branch where this is implemented, but there's a bug that broke matching. Don't currently have time to fix.~~
* ~~Re-implement command line arguments, to enable scripting and statistical simulation studies~~ DONE * ~~Re-implement command line arguments, to enable scripting and statistical simulation studies~~ DONE
* Re-implement CDR1 matching method * Re-implement CDR1 matching method
* Implement Duan and Su's maximum weight matching algorithm * Implement Duan and Su's maximum weight matching algorithm