Change plate reader/writer to use columns as wells

src/main/java/UserInterface.java

@@ -496,6 +496,14 @@ public class UserInterface {
         assert plateFile != null;
         PlateFileReader plateReader = new PlateFileReader(plateFile);
         Plate plate = new Plate(plateReader.getFilename(), plateReader.getWells());
+
+        //TAKE THIS OUT
+        PlateFileWriter writer = new PlateFileWriter(filename + "_plate", plate);
+        System.out.println("Writing Sample Plate to file");
+        writer.writePlateFile();
+        System.out.println("Sample Plate written to file: " + filename + "_plate");
+        //
+
         if (cellReader.getCells().size() == 0){
             System.out.println("No cell sample found.");
             System.out.println("Returning to main menu.");