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Change plate reader/writer to use columns as wells

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efischer
2022-02-20 19:17:56 -06:00
parent d1bb49b482
commit b2a4e9a42b
2 changed files with 8 additions and 0 deletions
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out/artifacts/BiGpairSEQ_Sim_jar/BiGpairSEQ_Sim.jar
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src/main/java/UserInterface.java
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@@ -496,6 +496,14 @@ public class UserInterface {
assert plateFile != null; assert plateFile != null;
PlateFileReader plateReader = new PlateFileReader(plateFile); PlateFileReader plateReader = new PlateFileReader(plateFile);
Plate plate = new Plate(plateReader.getFilename(), plateReader.getWells()); Plate plate = new Plate(plateReader.getFilename(), plateReader.getWells());
//TAKE THIS OUT
PlateFileWriter writer = new PlateFileWriter(filename + "_plate", plate);
System.out.println("Writing Sample Plate to file");
writer.writePlateFile();
System.out.println("Sample Plate written to file: " + filename + "_plate");
//
if (cellReader.getCells().size() == 0){ if (cellReader.getCells().size() == 0){
System.out.println("No cell sample found."); System.out.println("No cell sample found.");
System.out.println("Returning to main menu."); System.out.println("Returning to main menu.");