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eugenefischer
2022-10-01 16:12:21 -05:00
parent 2eede214c0
commit bde6da3076

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@@ -459,7 +459,7 @@ Example output:
--- ---
**NOTE: The p-values in the sample output above are not used for matching**—they aren't part of the BiGpairSEQ algorithm at all. **NOTE: The p-values in the sample output above are not used for matching**—they aren't part of the BiGpairSEQ algorithm at all.
P-values (if enabled in the interactive menu options or by using the -pv flag in the command line) are calculated *after* P-values (if enabled in the interactive menu options or by using the -pv flag on the command line) are calculated *after*
BiGpairSEQ matching is completed, for purposes of comparison with pairSEQ only, using the (corrected) formula from the BiGpairSEQ matching is completed, for purposes of comparison with pairSEQ only, using the (corrected) formula from the
original pairSEQ paper. (Howie, et al. 2015) Calculation of p-values is off by default to reduce processing time. original pairSEQ paper. (Howie, et al. 2015) Calculation of p-values is off by default to reduce processing time.