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eugenefischer
2022-10-01 16:12:21 -05:00
parent 2eede214c0
commit bde6da3076

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@@ -459,7 +459,7 @@ Example output:
---
**NOTE: The p-values in the sample output above are not used for matching**—they aren't part of the BiGpairSEQ algorithm at all.
P-values (if enabled in the interactive menu options or by using the -pv flag in the command line) are calculated *after*
P-values (if enabled in the interactive menu options or by using the -pv flag on the command line) are calculated *after*
BiGpairSEQ matching is completed, for purposes of comparison with pairSEQ only, using the (corrected) formula from the
original pairSEQ paper. (Howie, et al. 2015) Calculation of p-values is off by default to reduce processing time.