eugenefischer
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3c2ec9002e
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Add field for algorithm type, methods to set algorithm type
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2022-10-22 14:13:31 -05:00 |
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eugenefischer
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bcf3af5a83
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Update algorithm type names
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2022-10-22 14:10:00 -05:00 |
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eugenefischer
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fcca22a2f0
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Rename class, modify bidding to include marginal item value
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2022-10-22 13:18:43 -05:00 |
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eugenefischer
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910de0ce9d
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Fix typos
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2022-10-21 13:46:10 -05:00 |
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eugenefischer
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ef349ea5f6
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Correctly store matching weight
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2022-10-14 18:44:56 -05:00 |
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eugenefischer
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174db66c46
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Clean up comments
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2022-10-14 18:31:32 -05:00 |
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eugenefischer
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b3273855a6
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Test simpler source/target differentiation
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2022-10-14 18:11:21 -05:00 |
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eugenefischer
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51c1bc2551
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Skip edges with zero weight
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2022-10-14 18:09:34 -05:00 |
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eugenefischer
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f7d522e95d
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Comment out old MWM algorithm, add auction algorithm
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2022-10-14 17:38:07 -05:00 |
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eugenefischer
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5f0c089b0a
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add getter for matchingWeight
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2022-10-14 17:37:40 -05:00 |
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eugenefischer
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d3066095d9
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add getter/setter for potential
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2022-10-14 17:32:37 -05:00 |
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eugenefischer
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55a5d9a892
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Making fields final
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2022-10-14 17:32:21 -05:00 |
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eugenefischer
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49708f2f8a
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Initial auction algorithm implementation
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2022-10-14 17:31:59 -05:00 |
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eugenefischer
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c7934ca498
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update TODO
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2022-10-03 21:30:32 -05:00 |
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eugenefischer
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8f0ed91cb7
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revert previous commit
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2022-10-01 18:36:41 -05:00 |
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eugenefischer
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40bc2ce88d
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New linking test
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2022-10-01 18:35:58 -05:00 |
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eugenefischer
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a5a17d1f76
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Revert previous commit
v4.2
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2022-10-01 18:23:31 -05:00 |
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eugenefischer
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0f3ab0fdd7
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Section link test
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2022-10-01 18:22:55 -05:00 |
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eugenefischer
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01596ef43a
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Rename sections
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2022-10-01 18:16:08 -05:00 |
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eugenefischer
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cda25a2c62
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Update performance section and TODO
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2022-10-01 18:12:33 -05:00 |
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eugenefischer
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bde6da3076
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fix typo
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2022-10-01 16:12:21 -05:00 |
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eugenefischer
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2eede214c0
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fix typo
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2022-10-01 16:11:32 -05:00 |
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eugenefischer
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98ce708825
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Remove questionable claim, reorder simulation experiments
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2022-10-01 15:46:22 -05:00 |
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eugenefischer
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e7e85a4542
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Comment out questionable claim
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2022-10-01 15:44:29 -05:00 |
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eugenefischer
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c0dd2d31f2
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Update version number
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2022-10-01 15:21:33 -05:00 |
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eugenefischer
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cf103c5223
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Add flag to enable p-value calculation
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2022-10-01 14:36:22 -05:00 |
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eugenefischer
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26f66fe139
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Remove outdated comments
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2022-10-01 14:35:35 -05:00 |
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eugenefischer
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89295777ef
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Update output example
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2022-10-01 14:30:46 -05:00 |
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eugenefischer
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99c92e6eb5
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Update TODO
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2022-10-01 14:21:23 -05:00 |
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eugenefischer
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b82176517c
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Update TOC, command line options
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2022-10-01 13:59:03 -05:00 |
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eugenefischer
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0657db5653
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tyoo
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2022-10-01 13:44:17 -05:00 |
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eugenefischer
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9f0ac227e2
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Clarify steps and reasoning behind the algorithm
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2022-10-01 13:43:14 -05:00 |
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eugenefischer
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54896bc47f
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Correct typo, remove redundant information
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2022-10-01 13:01:44 -05:00 |
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eugenefischer
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b19a4d37c2
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Update readme with newer results, new menu options
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2022-10-01 13:00:33 -05:00 |
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eugenefischer
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457d643477
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Make calculation of p-values optional, defaulting to off
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2022-09-30 03:17:58 -05:00 |
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eugenefischer
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593dd6c60f
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Add sample cell filename, cell sample size, and sample plate size to metadata
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2022-09-30 02:58:15 -05:00 |
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eugenefischer
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b8aeeb988f
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Add sequence dropout rate to metadata output
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2022-09-30 00:33:41 -05:00 |
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eugenefischer
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b9b13fb75e
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Rename dropout rate flag
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2022-09-29 23:58:08 -05:00 |
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eugenefischer
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289220e0d0
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Remove statements about pre-filtering types. Can add that back if I ever actually parameterize that.
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2022-09-29 22:10:42 -05:00 |
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eugenefischer
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19badac92b
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Correct misstatement of filter condition in Algorithm section
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2022-09-29 18:32:42 -05:00 |
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eugenefischer
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633334a1b8
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Update Theory section, add Contents and Algorithm section.
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2022-09-29 18:30:07 -05:00 |
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eugenefischer
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e308e47578
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Correct error in comments
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2022-09-29 18:29:43 -05:00 |
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eugenefischer
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133984276f
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Change access modifiers and add count of wells removed to output
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2022-09-29 16:03:10 -05:00 |
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eugenefischer
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ec6713a1c0
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Implement filtering for wells with anomalous read counts
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2022-09-29 16:03:10 -05:00 |
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097590cf21
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Add method to remove a well from the SequenceRecord (git committed as past self due to IDE misclick)
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2022-09-29 16:03:10 -05:00 |
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eugenefischer
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f1e4c4f194
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Remove duplicate output statements
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2022-09-29 01:05:36 -05:00 |
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eugenefischer
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b6218c3ed3
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update version
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2022-09-29 00:53:11 -05:00 |
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eugenefischer
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756e5572b9
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update readme
v4.1
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2022-09-29 00:00:19 -05:00 |
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eugenefischer
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c30167d5ec
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Change real sequence collision so it isn't biased toward sequences in the earlier wells.
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2022-09-28 23:15:55 -05:00 |
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eugenefischer
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a19525f5bb
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update readme
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2022-09-28 23:01:59 -05:00 |
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