eugenefischer
|
61d1eb3eb1
|
Revert "Reword output message"
This reverts commit 63317f2aa0.
|
2022-09-25 14:34:31 -05:00 |
|
eugenefischer
|
cb41b45204
|
Revert "Reword option menu item"
This reverts commit 06e72314b0.
|
2022-09-25 14:34:31 -05:00 |
|
eugenefischer
|
a84d2e1bfe
|
Revert "Add comment on map data encodng"
This reverts commit 73c83bf35d.
|
2022-09-25 14:34:31 -05:00 |
|
eugenefischer
|
7b61d2c0d7
|
Revert "update version number"
This reverts commit e4e5a1f979.
|
2022-09-25 14:34:31 -05:00 |
|
eugenefischer
|
56454417c0
|
Revert "Restore pre-filtering of singleton and saturating sequences"
This reverts commit 5c03909a11.
|
2022-09-25 14:34:31 -05:00 |
|
eugenefischer
|
8ee1c5903e
|
Merge branch 'master' into Dev_Vertex
# Conflicts:
# src/main/java/GraphMLFileReader.java
# src/main/java/InteractiveInterface.java
# src/main/java/Simulator.java
|
2022-09-25 14:18:56 -05:00 |
|
eugenefischer
|
5c03909a11
|
Restore pre-filtering of singleton and saturating sequences
|
2022-09-22 01:39:13 -05:00 |
|
eugenefischer
|
e4e5a1f979
|
update version number
|
2022-09-22 00:00:02 -05:00 |
|
eugenefischer
|
73c83bf35d
|
Add comment on map data encodng
|
2022-09-21 21:46:00 -05:00 |
|
eugenefischer
|
06e72314b0
|
Reword option menu item
|
2022-09-21 21:43:47 -05:00 |
|
eugenefischer
|
63317f2aa0
|
Reword output message
|
2022-09-21 18:08:52 -05:00 |
|
eugenefischer
|
29b844afd2
|
by-hand merge of needed code from custom vertex branch
|
2022-09-21 16:48:26 -05:00 |
|
eugenefischer
|
dea4972927
|
remove prefiltering of singletons and saturating sequences
|
2022-09-21 16:09:08 -05:00 |
|
eugenefischer
|
9ae38bf247
|
Fix bug in correct match counter
|
2022-09-21 15:59:23 -05:00 |
|
eugenefischer
|
cf771ce574
|
parameterized sequence indices
|
2022-09-21 13:15:49 -05:00 |
|
|
|
1df86f01df
|
parameterized sequence indices
|
2022-03-05 12:03:31 -06:00 |
|
|
|
96ba57d653
|
Remove singleton sequences from wells in initial filtering
|
2022-03-04 16:14:17 -06:00 |
|
|
|
b602fb02f1
|
Remove obsolete comments
|
2022-03-02 23:35:24 -06:00 |
|
|
|
4c872ed48e
|
Add optional stdout print flags
|
2022-03-01 15:27:04 -06:00 |
|
|
|
3fc39302c7
|
Add detail to error message
|
2022-03-01 15:24:14 -06:00 |
|
|
|
578bdc0fbf
|
clarify help menu text
|
2022-03-01 15:08:43 -06:00 |
|
|
|
8275cf7740
|
Check for finite pairing error rate
|
2022-03-01 09:01:53 -06:00 |
|
|
|
64209691f0
|
Check for finite pairing error rate
|
2022-03-01 09:00:58 -06:00 |
|
|
|
9fb3095f0f
|
Clarify help text
|
2022-03-01 08:40:34 -06:00 |
|
|
|
25acf920c2
|
Add version information
|
2022-03-01 08:34:35 -06:00 |
|
|
|
e04d2d6777
|
Fix typos in help menu
|
2022-03-01 08:16:06 -06:00 |
|
|
|
3e41afaa64
|
bugfix
|
2022-02-27 19:08:29 -06:00 |
|
|
|
bc5d67680d
|
Add flag to print metadata to stdout
|
2022-02-27 17:36:23 -06:00 |
|
|
|
f2347e8fc2
|
check verbose flag
|
2022-02-27 17:35:50 -06:00 |
|
|
|
c8364d8a6e
|
check verbose flag
|
2022-02-27 17:34:20 -06:00 |
|
|
|
b1155f8100
|
Format -help CLI option
|
2022-02-27 16:53:46 -06:00 |
|
|
|
12b003a69f
|
Add -help CLI option
|
2022-02-27 16:45:30 -06:00 |
|
|
|
32c5bcaaff
|
Deactivate file I/O announcement for CLI
|
2022-02-27 16:16:24 -06:00 |
|
|
|
2485ac4cf6
|
Add getters to MatchingResult
|
2022-02-27 16:15:26 -06:00 |
|
|
|
05556bce0c
|
Add units to metadata
|
2022-02-27 16:08:59 -06:00 |
|
|
|
a822f69ea4
|
Control verbose output
|
2022-02-27 16:07:17 -06:00 |
|
|
|
3d1f8668ee
|
Control verbose output
|
2022-02-27 16:03:57 -06:00 |
|
|
|
40c743308b
|
Initialize wells
|
2022-02-27 15:54:47 -06:00 |
|
|
|
5246cc4a0c
|
Re-implement command line options
|
2022-02-27 15:35:07 -06:00 |
|
|
|
a5f7c0641d
|
Refactor for better encapsulation with CellSamples
|
2022-02-27 14:51:53 -06:00 |
|
|
|
8ebfc1469f
|
Refactor plate to fill its own wells in its constructor
|
2022-02-27 14:25:53 -06:00 |
|
|
|
b53f5f1cc0
|
Refactor plate to fill its own wells in its constructor
|
2022-02-27 14:17:16 -06:00 |
|
|
|
974d2d650c
|
Refactor plate to fill its own wells in its constructor
|
2022-02-27 14:17:11 -06:00 |
|
|
|
8935407ade
|
Get rid of GraphML reader, those files are larger than serialized files
|
2022-02-26 10:38:10 -06:00 |
|
|
|
9fcc20343d
|
Fix GraphML writer
|
2022-02-26 10:36:00 -06:00 |
|
|
|
817fe51708
|
Code cleanup
|
2022-02-26 09:56:46 -06:00 |
|
|
|
1ea68045ce
|
Refactor cdr3 matching to use new Vertex class
|
2022-02-26 09:49:16 -06:00 |
|
|
|
75b2aa9553
|
testing graph attributes
|
2022-02-26 08:58:52 -06:00 |
|
|
|
b3dc10f287
|
add graph attributes to graphml writer
|
2022-02-26 08:15:48 -06:00 |
|
|
|
fb8d8d8785
|
make heap type an enum
|
2022-02-26 08:15:31 -06:00 |
|
