Commit Graph

20 Commits

Author SHA1 Message Date
74ffbfd8ac make everything use same random number generator 2022-02-23 09:29:21 -06:00
4b597c4e5e remove old testing code 2022-02-23 08:10:35 -06:00
906c06062f Added metadata to MatchingResult to enable CLI options 2022-02-22 18:36:30 -06:00
cb1f7adece Change "peptide" references in code to "sequence", adding comments 2022-02-21 00:29:34 -06:00
f2b5d9e1b7 Rename and update readme 2022-02-20 11:58:12 -06:00
cb2c5a6024 Add plate well concentrations to output data 2022-02-20 02:29:42 -06:00
52afb1edc2 Add plate well concentrations to output data 2022-02-20 02:17:36 -06:00
9c52bc878a Add plate well concentrations to output data 2022-02-20 02:13:13 -06:00
248fe4d662 Add plate well concentrations to output data 2022-02-20 02:09:22 -06:00
5d0e60708c Add plate well concentrations to output data 2022-02-20 01:53:34 -06:00
837ef7bfe4 UI cleanup, some code cleanup 2022-02-20 01:05:28 -06:00
bf32a55e4b Implement matching using jheaps PairingHeap 2022-02-18 16:09:23 -06:00
acff88475b Command line arguments working, need better documentation and error handling 2021-11-23 12:24:48 -06:00
2ab93dd4b7 Recording source file names in output files, allowing output of intermediate results 2021-11-18 15:38:29 -06:00
34e96d3b3d Refactor to reduce code repetition 2021-11-18 14:11:04 -06:00
26304e5dff bugfix 2021-11-16 09:29:07 -06:00
13b58e3204 Expanding simulation to attempt CDR3/CDR1 matching - doubles size of cells 2021-11-15 15:00:11 -06:00
e15cbc6672 All working, able to be built to .jar 2021-11-12 10:41:44 -06:00
d39fdbee3b Three ways of making graph, but [...]MatrixGenerator is fastest 2021-11-10 11:18:31 -06:00
82d5500ae8 Initial Commit - works well, but too memory intensive 2021-11-09 20:24:22 -06:00