86 lines
2.4 KiB
Java
86 lines
2.4 KiB
Java
import org.jheaps.AddressableHeap;
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import java.io.Serializable;
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import java.util.Map;
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public class Vertex implements Serializable, Comparable<Vertex> {
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private SequenceRecord record;
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private Integer vertexLabel;
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private Double potential;
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private AddressableHeap queue;
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public Vertex(SequenceRecord record, Integer vertexLabel) {
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this.record = record;
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this.vertexLabel = vertexLabel;
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}
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public SequenceRecord getRecord() { return record; }
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public SequenceType getType() { return record.getSequenceType(); }
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public Integer getVertexLabel() {
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return vertexLabel;
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}
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public String getSequence() {
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return record.getSequence();
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}
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public Integer getOccupancy() {
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return record.getOccupancy();
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}
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public Integer getReadCount() { return record.getReadCount(); }
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public Integer getReadCount(Integer well) { return record.getReadCount(well); }
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public Map<Integer, Integer> getWellOccupancies() { return record.getWellOccupancies(); }
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@Override //adapted from JGraphT example code
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public int hashCode()
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{
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return (this.getSequence() == null) ? 0 : this.getSequence().hashCode();
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}
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@Override //adapted from JGraphT example code
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public boolean equals(Object obj)
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{
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if (this == obj)
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return true;
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if (obj == null)
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return false;
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if (getClass() != obj.getClass())
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return false;
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Vertex other = (Vertex) obj;
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if (this.getSequence() == null) {
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return other.getSequence() == null;
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} else {
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return this.getSequence().equals(other.getSequence());
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}
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}
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@Override //adapted from JGraphT example code
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public String toString()
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{
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StringBuilder sb = new StringBuilder();
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sb.append("(").append(vertexLabel)
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.append(", Type: ").append(this.getType().name())
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.append(", Sequence: ").append(this.getSequence())
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.append(", Occupancy: ").append(this.getOccupancy()).append(")");
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return sb.toString();
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}
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@Override
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public int compareTo(Vertex other) {
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return this.vertexLabel - other.getVertexLabel();
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}
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public Double getPotential() {
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return potential;
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}
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public void setPotential(Double potential) {
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this.potential = potential;
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}
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}
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