efischer/BiGpairSEQ
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Remove statements about pre-filtering types. Can add that back if I ever actually parameterize that.

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eugenefischer
2022-09-29 22:10:42 -05:00
parent 19badac92b
commit 289220e0d0
1 changed files with 0 additions and 4 deletions
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src/main/java/Simulator.java
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@@ -315,10 +315,6 @@ public class Simulator implements GraphModificationFunctions {
metadata.put("real sequence collision rate", data.getRealSequenceCollisionRate().toString()); metadata.put("real sequence collision rate", data.getRealSequenceCollisionRate().toString());
metadata.put("total alphas read from plate", data.getAlphaCount().toString()); metadata.put("total alphas read from plate", data.getAlphaCount().toString());
metadata.put("total betas read from plate", data.getBetaCount().toString()); metadata.put("total betas read from plate", data.getBetaCount().toString());
//HARD CODED, PARAMETERIZE LATER
metadata.put("pre-filter sequences present in all wells", "true");
//HARD CODED, PARAMETERIZE LATER
metadata.put("pre-filter sequences based on occupancy/read count discrepancy", "true");
metadata.put("alphas in graph (after pre-filtering)", graphAlphaCount.toString()); metadata.put("alphas in graph (after pre-filtering)", graphAlphaCount.toString());
metadata.put("betas in graph (after pre-filtering)", graphBetaCount.toString()); metadata.put("betas in graph (after pre-filtering)", graphBetaCount.toString());
metadata.put("high overlap threshold for pairing", highThreshold.toString()); metadata.put("high overlap threshold for pairing", highThreshold.toString());