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Revert "Restore pre-filtering of singleton and saturating sequences"

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This reverts commit 5c03909a11.
This commit is contained in:
eugenefischer
2022-09-25 14:34:31 -05:00
parent 5c03909a11
commit 56454417c0
1 changed files with 4 additions and 4 deletions
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8
src/main/java/Simulator.java
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@@ -48,10 +48,10 @@ public class Simulator implements GraphModificationFunctions {
if(verbose){System.out.println("Well maps made");} if(verbose){System.out.println("Well maps made");}
if(verbose){System.out.println("Removing singleton sequences and sequences present in all wells.");} // if(verbose){System.out.println("Removing singleton sequences and sequences present in all wells.");}
filterByOccupancyThresholds(allAlphas, 2, numWells - 1); // filterByOccupancyThresholds(allAlphas, 2, numWells - 1);
filterByOccupancyThresholds(allBetas, 2, numWells - 1); // filterByOccupancyThresholds(allBetas, 2, numWells - 1);
if(verbose){System.out.println("Sequences removed");} // if(verbose){System.out.println("Sequences removed");}
int pairableAlphaCount = allAlphas.size(); int pairableAlphaCount = allAlphas.size();
if(verbose){System.out.println("Remaining alphas count: " + pairableAlphaCount);} if(verbose){System.out.println("Remaining alphas count: " + pairableAlphaCount);}
int pairableBetaCount = allBetas.size(); int pairableBetaCount = allBetas.size();