eugenefischer
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202ad4c834
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mention forward/reverse auction algorithms
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2023-04-09 20:42:58 -05:00 |
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eugenefischer
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96d49d0034
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clarifying comment
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2023-04-09 19:48:43 -05:00 |
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eugenefischer
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d8e5f7ece0
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update todo
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2023-04-09 13:00:41 -05:00 |
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eugenefischer
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9c81d919b4
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add disclosure section
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2023-01-18 16:28:16 -06:00 |
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eugenefischer
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70b08e7c22
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Bugfixes and streamlining
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2022-10-22 17:59:01 -05:00 |
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eugenefischer
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44158d264c
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Correct sequence count
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2022-10-22 16:16:32 -05:00 |
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eugenefischer
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e97c2989db
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Add dropout rate calculation to read-in of data from plate file (this may slow down read-in by a lot)
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2022-10-22 16:04:41 -05:00 |
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eugenefischer
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f7709ada73
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Change order of metadata comments
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2022-10-22 15:50:35 -05:00 |
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eugenefischer
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25b37eff48
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renamed to MaximumIntegerWeightBipartiteAuctionMatching
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2022-10-22 15:00:22 -05:00 |
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eugenefischer
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fbbb5a8792
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Update comments
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2022-10-22 14:59:43 -05:00 |
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eugenefischer
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4b9d7f8494
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Add option to select matching algorithm type, rename types in output
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2022-10-22 14:59:24 -05:00 |
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eugenefischer
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0de12a3a12
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Refactor to use selected algorithm type
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2022-10-22 14:58:40 -05:00 |
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eugenefischer
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3c2ec9002e
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Add field for algorithm type, methods to set algorithm type
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2022-10-22 14:13:31 -05:00 |
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eugenefischer
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bcf3af5a83
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Update algorithm type names
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2022-10-22 14:10:00 -05:00 |
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eugenefischer
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fcca22a2f0
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Rename class, modify bidding to include marginal item value
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2022-10-22 13:18:43 -05:00 |
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eugenefischer
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910de0ce9d
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Fix typos
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2022-10-21 13:46:10 -05:00 |
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eugenefischer
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ef349ea5f6
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Correctly store matching weight
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2022-10-14 18:44:56 -05:00 |
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eugenefischer
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174db66c46
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Clean up comments
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2022-10-14 18:31:32 -05:00 |
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eugenefischer
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b3273855a6
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Test simpler source/target differentiation
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2022-10-14 18:11:21 -05:00 |
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eugenefischer
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51c1bc2551
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Skip edges with zero weight
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2022-10-14 18:09:34 -05:00 |
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eugenefischer
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f7d522e95d
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Comment out old MWM algorithm, add auction algorithm
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2022-10-14 17:38:07 -05:00 |
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eugenefischer
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5f0c089b0a
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add getter for matchingWeight
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2022-10-14 17:37:40 -05:00 |
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eugenefischer
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d3066095d9
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add getter/setter for potential
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2022-10-14 17:32:37 -05:00 |
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eugenefischer
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55a5d9a892
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Making fields final
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2022-10-14 17:32:21 -05:00 |
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eugenefischer
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49708f2f8a
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Initial auction algorithm implementation
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2022-10-14 17:31:59 -05:00 |
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eugenefischer
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c7934ca498
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update TODO
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2022-10-03 21:30:32 -05:00 |
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eugenefischer
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8f0ed91cb7
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revert previous commit
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2022-10-01 18:36:41 -05:00 |
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eugenefischer
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40bc2ce88d
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New linking test
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2022-10-01 18:35:58 -05:00 |
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eugenefischer
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a5a17d1f76
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Revert previous commit
v4.2
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2022-10-01 18:23:31 -05:00 |
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eugenefischer
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0f3ab0fdd7
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Section link test
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2022-10-01 18:22:55 -05:00 |
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eugenefischer
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01596ef43a
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Rename sections
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2022-10-01 18:16:08 -05:00 |
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eugenefischer
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cda25a2c62
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Update performance section and TODO
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2022-10-01 18:12:33 -05:00 |
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eugenefischer
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bde6da3076
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fix typo
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2022-10-01 16:12:21 -05:00 |
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eugenefischer
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2eede214c0
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fix typo
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2022-10-01 16:11:32 -05:00 |
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eugenefischer
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98ce708825
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Remove questionable claim, reorder simulation experiments
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2022-10-01 15:46:22 -05:00 |
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eugenefischer
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e7e85a4542
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Comment out questionable claim
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2022-10-01 15:44:29 -05:00 |
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eugenefischer
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c0dd2d31f2
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Update version number
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2022-10-01 15:21:33 -05:00 |
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eugenefischer
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cf103c5223
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Add flag to enable p-value calculation
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2022-10-01 14:36:22 -05:00 |
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eugenefischer
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26f66fe139
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Remove outdated comments
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2022-10-01 14:35:35 -05:00 |
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eugenefischer
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89295777ef
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Update output example
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2022-10-01 14:30:46 -05:00 |
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eugenefischer
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99c92e6eb5
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Update TODO
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2022-10-01 14:21:23 -05:00 |
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eugenefischer
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b82176517c
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Update TOC, command line options
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2022-10-01 13:59:03 -05:00 |
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eugenefischer
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0657db5653
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tyoo
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2022-10-01 13:44:17 -05:00 |
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eugenefischer
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9f0ac227e2
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Clarify steps and reasoning behind the algorithm
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2022-10-01 13:43:14 -05:00 |
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eugenefischer
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54896bc47f
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Correct typo, remove redundant information
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2022-10-01 13:01:44 -05:00 |
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eugenefischer
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b19a4d37c2
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Update readme with newer results, new menu options
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2022-10-01 13:00:33 -05:00 |
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eugenefischer
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457d643477
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Make calculation of p-values optional, defaulting to off
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2022-09-30 03:17:58 -05:00 |
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eugenefischer
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593dd6c60f
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Add sample cell filename, cell sample size, and sample plate size to metadata
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2022-09-30 02:58:15 -05:00 |
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eugenefischer
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b8aeeb988f
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Add sequence dropout rate to metadata output
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2022-09-30 00:33:41 -05:00 |
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eugenefischer
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b9b13fb75e
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Rename dropout rate flag
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2022-09-29 23:58:08 -05:00 |
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