 eugenefischer
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d1810c453d
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Even more efficient graph creation (my initial scheme, but this time without accidentally changing what's in the sequence records)
v4.4
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2025-04-10 15:03:10 -05:00 |
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eugenefischer
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187401f2d6
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More efficient graph creation
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2025-04-10 14:06:11 -05:00 |
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eugenefischer
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678ce99424
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iterate over vertex wells correctly
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2025-04-10 13:34:04 -05:00 |
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eugenefischer
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c21e375303
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fix concurrent modification bug
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2025-04-10 13:33:47 -05:00 |
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eugenefischer
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57fe9c1619
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Update graph modification functions to work with edges directly
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2025-04-10 12:42:19 -05:00 |
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eugenefischer
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e1888a99c6
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refactor to construct the bipartite graph directly, rather than by using an adjacency matrix and a graph generator.
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2025-04-10 11:47:15 -05:00 |
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eugenefischer
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bcf5a4c749
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change artifact details
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2025-04-10 11:05:08 -05:00 |
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eugenefischer
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81d8a12765
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dependency update stuff
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2025-04-10 10:54:05 -05:00 |
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eugenefischer
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b5c0568e22
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Add dependencies
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2025-04-10 10:53:42 -05:00 |
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eugenefischer
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b7597cff2a
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update readme and add Zipf exponent option to CLI
v4.3
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2025-04-09 16:16:46 -05:00 |
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eugenefischer
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7bbeaf7dad
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update readme
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2025-04-09 14:40:49 -05:00 |
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eugenefischer
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945b967382
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update readme
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2025-04-09 14:39:46 -05:00 |
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eugenefischer
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a43ee469ea
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implement Zipf distribution
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2025-04-09 14:32:02 -05:00 |
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eugenefischer
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161a52aa89
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update readme
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2025-04-09 11:52:03 -05:00 |
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eugenefischer
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9b2ad9da09
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update readme
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2025-04-09 11:42:10 -05:00 |
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eugenefischer
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30a3f6e33d
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update citations
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2025-04-09 11:36:06 -05:00 |
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eugenefischer
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8cc1f19da1
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update links
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2025-04-09 11:31:05 -05:00 |
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eugenefischer
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3efa5c26d8
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fix index link
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2025-04-09 11:22:13 -05:00 |
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eugenefischer
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e686d4957b
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disable selection of the scaling integer weight MWM algorithm via the interactive interface
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2025-04-09 11:20:52 -05:00 |
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eugenefischer
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fbc0496675
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update readme and default heap type
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2025-04-09 11:18:21 -05:00 |
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eugenefischer
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0071cafbbd
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Rough implementation, missing final dual adjustment step, and may have other bugs as well as it does not yet output a maximum weight matching
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2025-04-09 10:17:13 -05:00 |
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eugenefischer
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3d302cf8ad
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initial commit of stub of integer weight scaling algorithm
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2025-03-27 13:42:27 -05:00 |
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eugenefischer
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5f5d77b0a4
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update citations
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2023-04-09 20:59:09 -05:00 |
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eugenefischer
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af32be85ee
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update TODO
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2023-04-09 20:49:39 -05:00 |
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eugenefischer
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58cdf9ae93
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Lookback AA implementation, doesn't currently work
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2023-04-09 20:45:03 -05:00 |
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eugenefischer
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202ad4c834
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mention forward/reverse auction algorithms
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2023-04-09 20:42:58 -05:00 |
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eugenefischer
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96d49d0034
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clarifying comment
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2023-04-09 19:48:43 -05:00 |
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eugenefischer
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d8e5f7ece0
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update todo
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2023-04-09 13:00:41 -05:00 |
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eugenefischer
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9c81d919b4
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add disclosure section
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2023-01-18 16:28:16 -06:00 |
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eugenefischer
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70b08e7c22
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Bugfixes and streamlining
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2022-10-22 17:59:01 -05:00 |
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eugenefischer
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44158d264c
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Correct sequence count
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2022-10-22 16:16:32 -05:00 |
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eugenefischer
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e97c2989db
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Add dropout rate calculation to read-in of data from plate file (this may slow down read-in by a lot)
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2022-10-22 16:04:41 -05:00 |
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eugenefischer
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f7709ada73
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Change order of metadata comments
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2022-10-22 15:50:35 -05:00 |
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eugenefischer
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25b37eff48
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renamed to MaximumIntegerWeightBipartiteAuctionMatching
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2022-10-22 15:00:22 -05:00 |
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eugenefischer
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fbbb5a8792
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Update comments
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2022-10-22 14:59:43 -05:00 |
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eugenefischer
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4b9d7f8494
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Add option to select matching algorithm type, rename types in output
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2022-10-22 14:59:24 -05:00 |
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eugenefischer
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0de12a3a12
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Refactor to use selected algorithm type
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2022-10-22 14:58:40 -05:00 |
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eugenefischer
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3c2ec9002e
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Add field for algorithm type, methods to set algorithm type
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2022-10-22 14:13:31 -05:00 |
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eugenefischer
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bcf3af5a83
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Update algorithm type names
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2022-10-22 14:10:00 -05:00 |
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eugenefischer
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fcca22a2f0
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Rename class, modify bidding to include marginal item value
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2022-10-22 13:18:43 -05:00 |
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eugenefischer
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910de0ce9d
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Fix typos
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2022-10-21 13:46:10 -05:00 |
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eugenefischer
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ef349ea5f6
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Correctly store matching weight
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2022-10-14 18:44:56 -05:00 |
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eugenefischer
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174db66c46
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Clean up comments
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2022-10-14 18:31:32 -05:00 |
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eugenefischer
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b3273855a6
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Test simpler source/target differentiation
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2022-10-14 18:11:21 -05:00 |
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eugenefischer
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51c1bc2551
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Skip edges with zero weight
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2022-10-14 18:09:34 -05:00 |
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eugenefischer
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f7d522e95d
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Comment out old MWM algorithm, add auction algorithm
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2022-10-14 17:38:07 -05:00 |
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eugenefischer
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5f0c089b0a
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add getter for matchingWeight
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2022-10-14 17:37:40 -05:00 |
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eugenefischer
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d3066095d9
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add getter/setter for potential
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2022-10-14 17:32:37 -05:00 |
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eugenefischer
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55a5d9a892
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Making fields final
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2022-10-14 17:32:21 -05:00 |
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eugenefischer
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49708f2f8a
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Initial auction algorithm implementation
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2022-10-14 17:31:59 -05:00 |
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