 eugenefischer
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e699795521
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Revert "by-hand merge of needed code from custom vertex branch"
This reverts commit 29b844afd2.
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2022-09-25 14:34:31 -05:00 |
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eugenefischer
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61d1eb3eb1
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Revert "Reword output message"
This reverts commit 63317f2aa0.
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2022-09-25 14:34:31 -05:00 |
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eugenefischer
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cb41b45204
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Revert "Reword option menu item"
This reverts commit 06e72314b0.
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2022-09-25 14:34:31 -05:00 |
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eugenefischer
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a84d2e1bfe
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Revert "Add comment on map data encodng"
This reverts commit 73c83bf35d.
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2022-09-25 14:34:31 -05:00 |
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eugenefischer
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7b61d2c0d7
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Revert "update version number"
This reverts commit e4e5a1f979.
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2022-09-25 14:34:31 -05:00 |
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eugenefischer
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56454417c0
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Revert "Restore pre-filtering of singleton and saturating sequences"
This reverts commit 5c03909a11.
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2022-09-25 14:34:31 -05:00 |
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eugenefischer
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5c03909a11
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Restore pre-filtering of singleton and saturating sequences
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2022-09-22 01:39:13 -05:00 |
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eugenefischer
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e4e5a1f979
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update version number
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2022-09-22 00:00:02 -05:00 |
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eugenefischer
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73c83bf35d
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Add comment on map data encodng
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2022-09-21 21:46:00 -05:00 |
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eugenefischer
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06e72314b0
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Reword option menu item
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2022-09-21 21:43:47 -05:00 |
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eugenefischer
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63317f2aa0
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Reword output message
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2022-09-21 18:08:52 -05:00 |
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eugenefischer
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29b844afd2
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by-hand merge of needed code from custom vertex branch
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2022-09-21 16:48:26 -05:00 |
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eugenefischer
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cf771ce574
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parameterized sequence indices
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2022-09-21 13:15:49 -05:00 |
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 efischer
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1df86f01df
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parameterized sequence indices
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2022-03-05 12:03:31 -06:00 |
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efischer
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96ba57d653
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Remove singleton sequences from wells in initial filtering
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2022-03-04 16:14:17 -06:00 |
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efischer
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b602fb02f1
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Remove obsolete comments
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2022-03-02 23:35:24 -06:00 |
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efischer
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4c872ed48e
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Add optional stdout print flags
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2022-03-01 15:27:04 -06:00 |
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efischer
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3fc39302c7
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Add detail to error message
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2022-03-01 15:24:14 -06:00 |
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efischer
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578bdc0fbf
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clarify help menu text
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2022-03-01 15:08:43 -06:00 |
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efischer
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8275cf7740
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Check for finite pairing error rate
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2022-03-01 09:01:53 -06:00 |
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efischer
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64209691f0
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Check for finite pairing error rate
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2022-03-01 09:00:58 -06:00 |
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efischer
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9fb3095f0f
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Clarify help text
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2022-03-01 08:40:34 -06:00 |
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efischer
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25acf920c2
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Add version information
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2022-03-01 08:34:35 -06:00 |
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efischer
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e04d2d6777
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Fix typos in help menu
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2022-03-01 08:16:06 -06:00 |
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efischer
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3e41afaa64
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bugfix
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2022-02-27 19:08:29 -06:00 |
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efischer
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bc5d67680d
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Add flag to print metadata to stdout
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2022-02-27 17:36:23 -06:00 |
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efischer
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f2347e8fc2
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check verbose flag
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2022-02-27 17:35:50 -06:00 |
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efischer
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c8364d8a6e
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check verbose flag
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2022-02-27 17:34:20 -06:00 |
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efischer
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b1155f8100
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Format -help CLI option
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2022-02-27 16:53:46 -06:00 |
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efischer
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12b003a69f
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Add -help CLI option
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2022-02-27 16:45:30 -06:00 |
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efischer
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32c5bcaaff
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Deactivate file I/O announcement for CLI
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2022-02-27 16:16:24 -06:00 |
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efischer
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2485ac4cf6
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Add getters to MatchingResult
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2022-02-27 16:15:26 -06:00 |
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efischer
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05556bce0c
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Add units to metadata
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2022-02-27 16:08:59 -06:00 |
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efischer
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a822f69ea4
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Control verbose output
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2022-02-27 16:07:17 -06:00 |
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efischer
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3d1f8668ee
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Control verbose output
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2022-02-27 16:03:57 -06:00 |
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efischer
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40c743308b
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Initialize wells
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2022-02-27 15:54:47 -06:00 |
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efischer
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5246cc4a0c
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Re-implement command line options
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2022-02-27 15:35:07 -06:00 |
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efischer
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a5f7c0641d
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Refactor for better encapsulation with CellSamples
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2022-02-27 14:51:53 -06:00 |
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efischer
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8ebfc1469f
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Refactor plate to fill its own wells in its constructor
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2022-02-27 14:25:53 -06:00 |
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efischer
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b53f5f1cc0
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Refactor plate to fill its own wells in its constructor
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2022-02-27 14:17:16 -06:00 |
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efischer
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974d2d650c
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Refactor plate to fill its own wells in its constructor
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2022-02-27 14:17:11 -06:00 |
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efischer
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8935407ade
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Get rid of GraphML reader, those files are larger than serialized files
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2022-02-26 10:38:10 -06:00 |
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efischer
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9fcc20343d
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Fix GraphML writer
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2022-02-26 10:36:00 -06:00 |
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efischer
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e4d094d796
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Adding GraphML output to options menu
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2022-02-24 17:22:07 -06:00 |
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efischer
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f385ebc31f
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Update vertex class
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2022-02-24 16:25:01 -06:00 |
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efischer
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8745550e11
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add MWM algorithm type to matching metadata
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2022-02-24 16:24:48 -06:00 |
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efischer
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41805135b3
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remove unused import
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2022-02-24 16:04:30 -06:00 |
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efischer
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373a5e02f9
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Refactor to make CellSample class more self-contained
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2022-02-24 16:03:49 -06:00 |
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efischer
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3d9890e16a
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Change GraphModificationFunctions to only save edges if graph data is cached
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2022-02-24 15:32:27 -06:00 |
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efischer
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dd64ac2731
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Change GraphModificationFunctions to interface
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2022-02-24 15:18:09 -06:00 |
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