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b53f5f1cc0
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Refactor plate to fill its own wells in its constructor
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2022-02-27 14:17:16 -06:00 |
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974d2d650c
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Refactor plate to fill its own wells in its constructor
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2022-02-27 14:17:11 -06:00 |
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8935407ade
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Get rid of GraphML reader, those files are larger than serialized files
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2022-02-26 10:38:10 -06:00 |
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9fcc20343d
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Fix GraphML writer
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2022-02-26 10:36:00 -06:00 |
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817fe51708
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Code cleanup
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2022-02-26 09:56:46 -06:00 |
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1ea68045ce
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Refactor cdr3 matching to use new Vertex class
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2022-02-26 09:49:16 -06:00 |
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75b2aa9553
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testing graph attributes
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2022-02-26 08:58:52 -06:00 |
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b3dc10f287
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add graph attributes to graphml writer
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2022-02-26 08:15:48 -06:00 |
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fb8d8d8785
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make heap type an enum
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2022-02-26 08:15:31 -06:00 |
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ab437512e9
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make Vertex serializable
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2022-02-26 07:45:36 -06:00 |
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7b03a3cce8
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bugfix
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2022-02-26 07:35:34 -06:00 |
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f032d3e852
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rewrite GraphML importer/exporter
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2022-02-26 07:34:07 -06:00 |
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b604b1d3cd
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Changing graph to use Vertex class
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2022-02-26 06:19:08 -06:00 |
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e4d094d796
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Adding GraphML output to options menu
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2022-02-24 17:22:07 -06:00 |
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f385ebc31f
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Update vertex class
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2022-02-24 16:25:01 -06:00 |
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8745550e11
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add MWM algorithm type to matching metadata
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2022-02-24 16:24:48 -06:00 |
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41805135b3
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remove unused import
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2022-02-24 16:04:30 -06:00 |
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373a5e02f9
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Refactor to make CellSample class more self-contained
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2022-02-24 16:03:49 -06:00 |
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3d9890e16a
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Change GraphModificationFunctions to only save edges if graph data is cached
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2022-02-24 15:32:27 -06:00 |
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dd64ac2731
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Change GraphModificationFunctions to interface
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2022-02-24 15:18:09 -06:00 |
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a5238624f1
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Change default graph caching behavior to false
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2022-02-24 15:14:28 -06:00 |
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d8ba42b801
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Fix Algorithm Options menu output
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2022-02-24 14:59:08 -06:00 |
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8edd89d784
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Added heap type selection, fixed error handling
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2022-02-24 14:48:19 -06:00 |
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108b0ec13f
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Improve options menu wording
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2022-02-24 12:42:09 -06:00 |
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a8b58d3f79
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Output new setting when changing options
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2022-02-24 12:38:15 -06:00 |
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bf64d57731
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implement option menu for file caching
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2022-02-24 12:30:47 -06:00 |
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c068c3db3c
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implement option menu for file caching
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2022-02-23 20:35:31 -06:00 |
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17ae763c6c
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Generate populations correctly
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2022-02-23 10:37:40 -06:00 |
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decdb147a9
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Cache everything
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2022-02-23 10:30:42 -06:00 |
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74ffbfd8ac
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make everything use same random number generator
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2022-02-23 09:29:21 -06:00 |
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08699ce8ce
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Change output order to match interactive UI
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2022-02-23 08:56:09 -06:00 |
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69b0cc535c
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Error checking
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2022-02-23 08:55:07 -06:00 |
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e58f7b0a55
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checking for possible divide by zero error.
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2022-02-23 08:54:14 -06:00 |
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dd2164c250
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implement sample plates with random well populations
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2022-02-23 08:14:17 -06:00 |
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7323093bdc
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change "getRandomNumber" to "getRandomInt" for consistency.
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2022-02-23 08:13:52 -06:00 |
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f904cf6672
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add more data caching code
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2022-02-23 08:13:06 -06:00 |
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3ccee9891b
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change "concentrations" to "populations" for consistency
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2022-02-23 08:12:48 -06:00 |
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40c2be1cfb
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create populations string correctly
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2022-02-23 08:11:01 -06:00 |
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4b597c4e5e
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remove old testing code
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2022-02-23 08:10:35 -06:00 |
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8e9a250890
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Cache graph data on creation
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2022-02-22 22:23:55 -06:00 |
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1630f9ccba
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Moved I/O alert to file reader
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2022-02-22 22:11:50 -06:00 |
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d785aa0da2
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Moved I/O alert to file reader
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2022-02-22 22:10:31 -06:00 |
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a7afeb6119
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bugfixes
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2022-02-22 22:10:09 -06:00 |
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f8167b0774
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Add .jar manifest to repo
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2022-02-22 21:45:46 -06:00 |
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68ee9e4bb6
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Implemented storing graphs in memory for multiple pairing experiments
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2022-02-22 21:30:00 -06:00 |
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875f457a2d
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reimplement CLI (in progress)
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2022-02-22 19:42:23 -06:00 |
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906c06062f
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Added metadata to MatchingResult to enable CLI options
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2022-02-22 18:36:30 -06:00 |
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90ae2ff474
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Re-implemeting CLI options (in progress)
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2022-02-22 17:37:00 -06:00 |
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aec7e3016f
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Typos in documentation
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2022-02-21 11:19:54 -06:00 |
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cb1f7adece
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Change "peptide" references in code to "sequence", adding comments
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2022-02-21 00:29:34 -06:00 |
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