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e5ddc73723
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Finish reverting back to wells-as-rows
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2022-02-20 20:54:44 -06:00 |
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9b18fac74f
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Invoke garbage collection
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2022-02-20 20:47:12 -06:00 |
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63ef6aa7a0
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Revert attempt to switch plate output format. It worked, but introduced a bug in graph filtering I don't want to chase down
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2022-02-20 20:45:35 -06:00 |
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7558455f39
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Correct errors in output and documentation
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2022-02-20 20:13:38 -06:00 |
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410f0ae547
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Remove testing code, add garbage collection calls
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2022-02-20 20:06:45 -06:00 |
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1bc6a11545
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Change plate reader/writer to use columns as wells
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2022-02-20 19:58:24 -06:00 |
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2b13e10e95
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Change plate reader/writer to use columns as wells
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2022-02-20 19:48:09 -06:00 |
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4fd5baeb98
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Change plate reader/writer to use columns as wells
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2022-02-20 19:41:06 -06:00 |
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b2a4e9a42b
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Change plate reader/writer to use columns as wells
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2022-02-20 19:17:56 -06:00 |
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d1bb49b482
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Change plate reader/writer to use columns as wells
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2022-02-20 19:12:11 -06:00 |
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9adb7dffb8
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Change plate reader/writer to use columns as wells
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2022-02-20 19:08:04 -06:00 |
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2023bb9d7e
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Cleanup file output, add UI verbosity
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2022-02-20 18:31:31 -06:00 |
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f2b5d9e1b7
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Rename and update readme
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2022-02-20 11:58:12 -06:00 |
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74c8cafd81
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scan for filename
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2022-02-20 03:08:31 -06:00 |
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d1c37b5ccd
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Relocate overlap threshold filters
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2022-02-20 03:05:56 -06:00 |
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cb2c5a6024
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Add plate well concentrations to output data
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2022-02-20 02:29:42 -06:00 |
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284a5b3a40
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Add plate well concentrations to output data
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2022-02-20 02:23:31 -06:00 |
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52afb1edc2
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Add plate well concentrations to output data
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2022-02-20 02:17:36 -06:00 |
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9c52bc878a
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Add plate well concentrations to output data
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2022-02-20 02:13:13 -06:00 |
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248fe4d662
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Add plate well concentrations to output data
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2022-02-20 02:09:22 -06:00 |
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5d0e60708c
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Add plate well concentrations to output data
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2022-02-20 01:53:34 -06:00 |
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c96b7237e9
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Add plate well concentrations to output data
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2022-02-20 01:40:01 -06:00 |
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0b28259800
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Add plate well concentrations to output data
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2022-02-20 01:13:22 -06:00 |
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837ef7bfe4
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UI cleanup, some code cleanup
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2022-02-20 01:05:28 -06:00 |
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0bebbc7602
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Add missing filtering code
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2022-02-19 22:56:38 -06:00 |
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84f7ddb696
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Fix interactive output
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2022-02-19 22:49:50 -06:00 |
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c4633da9eb
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Correct propogation of peptide counts
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2022-02-19 22:33:38 -06:00 |
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5b2ed165d0
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Clean up interactive text, bugfix
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2022-02-19 22:21:09 -06:00 |
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0026d8cdfe
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Use buffered input/output streams
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2022-02-19 22:04:41 -06:00 |
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13fb7168bf
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Refactor to read/write files of graph and map data
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2022-02-19 21:46:01 -06:00 |
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568a6be3c7
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Refactoring to allow graphs from file
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2022-02-19 17:23:55 -06:00 |
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6faacd9a82
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Adding parameters to filter by occupancy difference and percent overlap
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2022-02-19 14:05:26 -06:00 |
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47e23addfa
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Do new filtering before matching
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2022-02-18 17:42:05 -06:00 |
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b9ee31b64c
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Do new filtering before matching
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2022-02-18 17:28:24 -06:00 |
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bf32a55e4b
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Implement matching using jheaps PairingHeap
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2022-02-18 16:09:23 -06:00 |
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acff88475b
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Command line arguments working, need better documentation and error handling
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2021-11-23 12:24:48 -06:00 |
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32593308df
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Command line arguments for CDR3 matching implemented
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2021-11-20 10:43:57 -06:00 |
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981e24011d
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First attempt at command line arguments
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2021-11-19 17:31:18 -06:00 |
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2ab93dd4b7
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Recording source file names in output files, allowing output of intermediate results
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2021-11-18 15:38:29 -06:00 |
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34e96d3b3d
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Refactor to reduce code repetition
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2021-11-18 14:11:04 -06:00 |
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2064d7e9fc
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Implemented parameter for CDR1 frequency
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2021-11-18 11:55:54 -06:00 |
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2fee44d3ee
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removed unused imports
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2021-11-16 16:46:17 -06:00 |
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255a3ba66c
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Added timing to CDR3/CDR1 matching
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2021-11-16 16:37:29 -06:00 |
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48510a5b60
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Improved efficiency by pre-filtering peptide lists before making and processing graphs
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2021-11-16 16:31:35 -06:00 |
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26304e5dff
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bugfix
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2021-11-16 09:29:07 -06:00 |
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c28378632f
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bugfix
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2021-11-15 15:02:59 -06:00 |
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e61e384513
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bugfix
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2021-11-15 15:01:40 -06:00 |
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13b58e3204
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Expanding simulation to attempt CDR3/CDR1 matching - doubles size of cells
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2021-11-15 15:00:11 -06:00 |
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c425b05d8c
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Expanding simulation to attempt CDR3/CDR1 matching - doubles size of cells
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2021-11-15 11:24:46 -06:00 |
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b612d65bda
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typos
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2021-11-12 11:35:11 -06:00 |
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