Commit Graph

258 Commits

Author SHA1 Message Date
08699ce8ce Change output order to match interactive UI 2022-02-23 08:56:09 -06:00
69b0cc535c Error checking 2022-02-23 08:55:07 -06:00
e58f7b0a55 checking for possible divide by zero error. 2022-02-23 08:54:14 -06:00
dd2164c250 implement sample plates with random well populations 2022-02-23 08:14:17 -06:00
7323093bdc change "getRandomNumber" to "getRandomInt" for consistency. 2022-02-23 08:13:52 -06:00
f904cf6672 add more data caching code 2022-02-23 08:13:06 -06:00
3ccee9891b change "concentrations" to "populations" for consistency 2022-02-23 08:12:48 -06:00
40c2be1cfb create populations string correctly 2022-02-23 08:11:01 -06:00
4b597c4e5e remove old testing code 2022-02-23 08:10:35 -06:00
b2398531a3 Update readme 2022-02-23 05:11:36 +00:00
8e9a250890 Cache graph data on creation v1.1 2022-02-22 22:23:55 -06:00
e2a996c997 update readme 2022-02-22 22:23:40 -06:00
a5db89cb0b update readme 2022-02-22 22:13:01 -06:00
1630f9ccba Moved I/O alert to file reader 2022-02-22 22:11:50 -06:00
d785aa0da2 Moved I/O alert to file reader 2022-02-22 22:10:31 -06:00
a7afeb6119 bugfixes 2022-02-22 22:10:09 -06:00
f8167b0774 Add .jar manifest to repo 2022-02-22 21:45:46 -06:00
68ee9e4bb6 Implemented storing graphs in memory for multiple pairing experiments 2022-02-22 21:30:00 -06:00
fd2ec76b71 Realized how to store graph in memory 2022-02-22 19:42:35 -06:00
875f457a2d reimplement CLI (in progress) 2022-02-22 19:42:23 -06:00
906c06062f Added metadata to MatchingResult to enable CLI options 2022-02-22 18:36:30 -06:00
90ae2ff474 Re-implemeting CLI options (in progress) 2022-02-22 17:37:00 -06:00
7d983076f3 Add link to releases page for download 2022-02-22 16:34:24 -06:00
4b053e6ec4 Remove artifacts from tracking to stop repo bloat. v1.0 2022-02-22 16:14:50 -06:00
44784b7976 Remove artifacts from tracking to stop repo bloat. 2022-02-22 16:10:22 -06:00
7c19896dc9 update readme 2022-02-22 16:09:50 -06:00
aec7e3016f Typos in documentation 2022-02-21 11:19:54 -06:00
5c75c1ac09 Update readme.md 2022-02-21 06:53:30 +00:00
cb1f7adece Change "peptide" references in code to "sequence", adding comments 2022-02-21 00:29:34 -06:00
370de79546 Add performance section to readme 2022-02-21 00:02:49 -06:00
a803336f56 Add performance section to readme 2022-02-21 00:01:20 -06:00
94b54b3416 Add performance section to readme 2022-02-20 23:31:25 -06:00
601e141fd0 Update readme 2022-02-20 22:51:49 -06:00
8f9c6b7d33 Update readme TODO 2022-02-20 20:59:05 -06:00
e5ddc73723 Finish reverting back to wells-as-rows 2022-02-20 20:54:44 -06:00
9b18fac74f Invoke garbage collection 2022-02-20 20:47:12 -06:00
63ef6aa7a0 Revert attempt to switch plate output format. It worked, but introduced a bug in graph filtering I don't want to chase down 2022-02-20 20:45:35 -06:00
7558455f39 Correct errors in output and documentation 2022-02-20 20:13:38 -06:00
410f0ae547 Remove testing code, add garbage collection calls 2022-02-20 20:06:45 -06:00
1bc6a11545 Change plate reader/writer to use columns as wells 2022-02-20 19:58:24 -06:00
2b13e10e95 Change plate reader/writer to use columns as wells 2022-02-20 19:48:09 -06:00
4fd5baeb98 Change plate reader/writer to use columns as wells 2022-02-20 19:41:06 -06:00
b2a4e9a42b Change plate reader/writer to use columns as wells 2022-02-20 19:17:56 -06:00
d1bb49b482 Change plate reader/writer to use columns as wells 2022-02-20 19:12:11 -06:00
9adb7dffb8 Change plate reader/writer to use columns as wells 2022-02-20 19:08:04 -06:00
2023bb9d7e Cleanup file output, add UI verbosity 2022-02-20 18:31:31 -06:00
405fbf17ff improve documentation 2022-02-20 17:11:39 -06:00
24519f4a52 improve documentation 2022-02-20 17:04:25 -06:00
2afd01eeef improve documentation 2022-02-20 15:48:11 -06:00
10d0b711bf improve documentation 2022-02-20 15:38:40 -06:00