|
|
d785aa0da2
|
Moved I/O alert to file reader
|
2022-02-22 22:10:31 -06:00 |
|
|
|
a7afeb6119
|
bugfixes
|
2022-02-22 22:10:09 -06:00 |
|
|
|
f8167b0774
|
Add .jar manifest to repo
|
2022-02-22 21:45:46 -06:00 |
|
|
|
68ee9e4bb6
|
Implemented storing graphs in memory for multiple pairing experiments
|
2022-02-22 21:30:00 -06:00 |
|
|
|
875f457a2d
|
reimplement CLI (in progress)
|
2022-02-22 19:42:23 -06:00 |
|
|
|
906c06062f
|
Added metadata to MatchingResult to enable CLI options
|
2022-02-22 18:36:30 -06:00 |
|
|
|
90ae2ff474
|
Re-implemeting CLI options (in progress)
|
2022-02-22 17:37:00 -06:00 |
|
|
|
aec7e3016f
|
Typos in documentation
|
2022-02-21 11:19:54 -06:00 |
|
|
|
cb1f7adece
|
Change "peptide" references in code to "sequence", adding comments
|
2022-02-21 00:29:34 -06:00 |
|
|
|
e5ddc73723
|
Finish reverting back to wells-as-rows
|
2022-02-20 20:54:44 -06:00 |
|
|
|
9b18fac74f
|
Invoke garbage collection
|
2022-02-20 20:47:12 -06:00 |
|
|
|
63ef6aa7a0
|
Revert attempt to switch plate output format. It worked, but introduced a bug in graph filtering I don't want to chase down
|
2022-02-20 20:45:35 -06:00 |
|
|
|
7558455f39
|
Correct errors in output and documentation
|
2022-02-20 20:13:38 -06:00 |
|
|
|
410f0ae547
|
Remove testing code, add garbage collection calls
|
2022-02-20 20:06:45 -06:00 |
|
|
|
1bc6a11545
|
Change plate reader/writer to use columns as wells
|
2022-02-20 19:58:24 -06:00 |
|
|
|
2b13e10e95
|
Change plate reader/writer to use columns as wells
|
2022-02-20 19:48:09 -06:00 |
|
|
|
4fd5baeb98
|
Change plate reader/writer to use columns as wells
|
2022-02-20 19:41:06 -06:00 |
|
|
|
b2a4e9a42b
|
Change plate reader/writer to use columns as wells
|
2022-02-20 19:17:56 -06:00 |
|
|
|
d1bb49b482
|
Change plate reader/writer to use columns as wells
|
2022-02-20 19:12:11 -06:00 |
|
|
|
9adb7dffb8
|
Change plate reader/writer to use columns as wells
|
2022-02-20 19:08:04 -06:00 |
|
|
|
2023bb9d7e
|
Cleanup file output, add UI verbosity
|
2022-02-20 18:31:31 -06:00 |
|
|
|
f2b5d9e1b7
|
Rename and update readme
|
2022-02-20 11:58:12 -06:00 |
|
|
|
74c8cafd81
|
scan for filename
|
2022-02-20 03:08:31 -06:00 |
|
|
|
d1c37b5ccd
|
Relocate overlap threshold filters
|
2022-02-20 03:05:56 -06:00 |
|
|
|
cb2c5a6024
|
Add plate well concentrations to output data
|
2022-02-20 02:29:42 -06:00 |
|
|
|
284a5b3a40
|
Add plate well concentrations to output data
|
2022-02-20 02:23:31 -06:00 |
|
|
|
52afb1edc2
|
Add plate well concentrations to output data
|
2022-02-20 02:17:36 -06:00 |
|
|
|
9c52bc878a
|
Add plate well concentrations to output data
|
2022-02-20 02:13:13 -06:00 |
|
|
|
248fe4d662
|
Add plate well concentrations to output data
|
2022-02-20 02:09:22 -06:00 |
|
|
|
5d0e60708c
|
Add plate well concentrations to output data
|
2022-02-20 01:53:34 -06:00 |
|
|
|
c96b7237e9
|
Add plate well concentrations to output data
|
2022-02-20 01:40:01 -06:00 |
|
|
|
0b28259800
|
Add plate well concentrations to output data
|
2022-02-20 01:13:22 -06:00 |
|
|
|
837ef7bfe4
|
UI cleanup, some code cleanup
|
2022-02-20 01:05:28 -06:00 |
|
|
|
0bebbc7602
|
Add missing filtering code
|
2022-02-19 22:56:38 -06:00 |
|
|
|
84f7ddb696
|
Fix interactive output
|
2022-02-19 22:49:50 -06:00 |
|
|
|
c4633da9eb
|
Correct propogation of peptide counts
|
2022-02-19 22:33:38 -06:00 |
|
|
|
5b2ed165d0
|
Clean up interactive text, bugfix
|
2022-02-19 22:21:09 -06:00 |
|
|
|
0026d8cdfe
|
Use buffered input/output streams
|
2022-02-19 22:04:41 -06:00 |
|
|
|
13fb7168bf
|
Refactor to read/write files of graph and map data
|
2022-02-19 21:46:01 -06:00 |
|
|
|
568a6be3c7
|
Refactoring to allow graphs from file
|
2022-02-19 17:23:55 -06:00 |
|
|
|
6faacd9a82
|
Adding parameters to filter by occupancy difference and percent overlap
|
2022-02-19 14:05:26 -06:00 |
|
|
|
47e23addfa
|
Do new filtering before matching
|
2022-02-18 17:42:05 -06:00 |
|
|
|
b9ee31b64c
|
Do new filtering before matching
|
2022-02-18 17:28:24 -06:00 |
|
|
|
bf32a55e4b
|
Implement matching using jheaps PairingHeap
|
2022-02-18 16:09:23 -06:00 |
|
|
|
acff88475b
|
Command line arguments working, need better documentation and error handling
|
2021-11-23 12:24:48 -06:00 |
|
|
|
32593308df
|
Command line arguments for CDR3 matching implemented
|
2021-11-20 10:43:57 -06:00 |
|
|
|
981e24011d
|
First attempt at command line arguments
|
2021-11-19 17:31:18 -06:00 |
|
|
|
2ab93dd4b7
|
Recording source file names in output files, allowing output of intermediate results
|
2021-11-18 15:38:29 -06:00 |
|
|
|
34e96d3b3d
|
Refactor to reduce code repetition
|
2021-11-18 14:11:04 -06:00 |
|
|
|
2064d7e9fc
|
Implemented parameter for CDR1 frequency
|
2021-11-18 11:55:54 -06:00 |
|
