 efischer
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69b0cc535c
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Error checking
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2022-02-23 08:55:07 -06:00 |
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efischer
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e58f7b0a55
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checking for possible divide by zero error.
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2022-02-23 08:54:14 -06:00 |
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efischer
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dd2164c250
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implement sample plates with random well populations
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2022-02-23 08:14:17 -06:00 |
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efischer
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7323093bdc
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change "getRandomNumber" to "getRandomInt" for consistency.
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2022-02-23 08:13:52 -06:00 |
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efischer
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f904cf6672
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add more data caching code
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2022-02-23 08:13:06 -06:00 |
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efischer
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3ccee9891b
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change "concentrations" to "populations" for consistency
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2022-02-23 08:12:48 -06:00 |
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efischer
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40c2be1cfb
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create populations string correctly
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2022-02-23 08:11:01 -06:00 |
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efischer
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4b597c4e5e
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remove old testing code
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2022-02-23 08:10:35 -06:00 |
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efischer
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8e9a250890
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Cache graph data on creation
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2022-02-22 22:23:55 -06:00 |
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efischer
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1630f9ccba
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Moved I/O alert to file reader
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2022-02-22 22:11:50 -06:00 |
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efischer
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d785aa0da2
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Moved I/O alert to file reader
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2022-02-22 22:10:31 -06:00 |
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efischer
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a7afeb6119
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bugfixes
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2022-02-22 22:10:09 -06:00 |
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efischer
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f8167b0774
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Add .jar manifest to repo
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2022-02-22 21:45:46 -06:00 |
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efischer
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68ee9e4bb6
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Implemented storing graphs in memory for multiple pairing experiments
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2022-02-22 21:30:00 -06:00 |
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efischer
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875f457a2d
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reimplement CLI (in progress)
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2022-02-22 19:42:23 -06:00 |
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efischer
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906c06062f
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Added metadata to MatchingResult to enable CLI options
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2022-02-22 18:36:30 -06:00 |
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efischer
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90ae2ff474
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Re-implemeting CLI options (in progress)
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2022-02-22 17:37:00 -06:00 |
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efischer
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aec7e3016f
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Typos in documentation
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2022-02-21 11:19:54 -06:00 |
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efischer
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cb1f7adece
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Change "peptide" references in code to "sequence", adding comments
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2022-02-21 00:29:34 -06:00 |
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efischer
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e5ddc73723
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Finish reverting back to wells-as-rows
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2022-02-20 20:54:44 -06:00 |
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efischer
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9b18fac74f
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Invoke garbage collection
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2022-02-20 20:47:12 -06:00 |
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efischer
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63ef6aa7a0
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Revert attempt to switch plate output format. It worked, but introduced a bug in graph filtering I don't want to chase down
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2022-02-20 20:45:35 -06:00 |
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efischer
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7558455f39
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Correct errors in output and documentation
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2022-02-20 20:13:38 -06:00 |
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efischer
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410f0ae547
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Remove testing code, add garbage collection calls
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2022-02-20 20:06:45 -06:00 |
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efischer
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1bc6a11545
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Change plate reader/writer to use columns as wells
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2022-02-20 19:58:24 -06:00 |
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efischer
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2b13e10e95
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Change plate reader/writer to use columns as wells
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2022-02-20 19:48:09 -06:00 |
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efischer
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4fd5baeb98
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Change plate reader/writer to use columns as wells
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2022-02-20 19:41:06 -06:00 |
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efischer
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b2a4e9a42b
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Change plate reader/writer to use columns as wells
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2022-02-20 19:17:56 -06:00 |
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efischer
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d1bb49b482
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Change plate reader/writer to use columns as wells
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2022-02-20 19:12:11 -06:00 |
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efischer
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9adb7dffb8
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Change plate reader/writer to use columns as wells
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2022-02-20 19:08:04 -06:00 |
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efischer
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2023bb9d7e
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Cleanup file output, add UI verbosity
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2022-02-20 18:31:31 -06:00 |
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efischer
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f2b5d9e1b7
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Rename and update readme
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2022-02-20 11:58:12 -06:00 |
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efischer
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74c8cafd81
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scan for filename
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2022-02-20 03:08:31 -06:00 |
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efischer
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d1c37b5ccd
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Relocate overlap threshold filters
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2022-02-20 03:05:56 -06:00 |
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efischer
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cb2c5a6024
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Add plate well concentrations to output data
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2022-02-20 02:29:42 -06:00 |
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efischer
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284a5b3a40
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Add plate well concentrations to output data
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2022-02-20 02:23:31 -06:00 |
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efischer
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52afb1edc2
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Add plate well concentrations to output data
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2022-02-20 02:17:36 -06:00 |
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efischer
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9c52bc878a
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Add plate well concentrations to output data
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2022-02-20 02:13:13 -06:00 |
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efischer
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248fe4d662
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Add plate well concentrations to output data
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2022-02-20 02:09:22 -06:00 |
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efischer
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5d0e60708c
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Add plate well concentrations to output data
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2022-02-20 01:53:34 -06:00 |
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efischer
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c96b7237e9
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Add plate well concentrations to output data
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2022-02-20 01:40:01 -06:00 |
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efischer
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0b28259800
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Add plate well concentrations to output data
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2022-02-20 01:13:22 -06:00 |
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efischer
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837ef7bfe4
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UI cleanup, some code cleanup
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2022-02-20 01:05:28 -06:00 |
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efischer
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0bebbc7602
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Add missing filtering code
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2022-02-19 22:56:38 -06:00 |
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efischer
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84f7ddb696
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Fix interactive output
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2022-02-19 22:49:50 -06:00 |
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efischer
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c4633da9eb
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Correct propogation of peptide counts
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2022-02-19 22:33:38 -06:00 |
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efischer
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5b2ed165d0
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Clean up interactive text, bugfix
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2022-02-19 22:21:09 -06:00 |
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efischer
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0026d8cdfe
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Use buffered input/output streams
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2022-02-19 22:04:41 -06:00 |
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efischer
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13fb7168bf
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Refactor to read/write files of graph and map data
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2022-02-19 21:46:01 -06:00 |
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efischer
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568a6be3c7
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Refactoring to allow graphs from file
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2022-02-19 17:23:55 -06:00 |
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